DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ft and Pcdha4

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:XP_063133126.1 Gene:Pcdha4 / 116741 RGDID:620337 Length:1074 Species:Rattus norvegicus


Alignment Length:1090 Identity:277/1090 - (25%)
Similarity:443/1090 - (40%) Gaps:249/1090 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 ATTYEQYAAFPRRRSSSS-SPSGEM------------QSRAVDTSADFEVLEGQPRGTTVGFIPT 88
            |.:.:::.|:.|...:.: :|.|.|            ...|.....::.|||....|.|||.|.:
  Rat    87 APSLQEFGAWSRVAVAGAWTPKGRMVGWGMAVLCWWVSCGAAAGQLEYSVLEETEPGVTVGNIVS 151

  Fly    89 KPKFS--------YRFNEPPRE--FTLDPVTGEVKTNVVLDREGMRDHYDLVVLSSQPTY--PIE 141
            ..|.|        :||....||  |.:|..:|.:......|||.:.......:|:.:..:  |:|
  Rat   152 DLKLSAAALSLRNFRFLSNHREPYFGVDLGSGSLVVQEPADRERLCGTKAACILTYELMFEDPLE 216

  Fly   142 ---VRIKVLDVNDNSPEFPEPSIAISFSESATSGTRLLLDAATDADVGENGVTDQYEIVAGNVDN 203
               :|:::||.|||||.||...:.:...|....|:|.:|.:|.|||||.||.. .|.:   ::..
  Rat   217 LHKMRVRLLDTNDNSPIFPAGDVHLHIPEFLPPGSRFILPSAQDADVGSNGAL-SYSL---SISQ 277

  Fly   204 KFRLVTTANPSGDTSYLHLETTGNLDRESRGSYQLNISARDGGSPPRFGYLQVNVTILDVNDNPP 268
            .|.|...:...| :.|..|.....||||.|.::.|.::|.|||.|.|.|..||.:|::|.|||.|
  Rat   278 HFHLDMGSRVDG-SKYPELVLEKALDREQRDTHLLVLTAHDGGLPARSGAAQVTITVVDTNDNAP 341

  Fly   269 IFDHSDYNVSLNETALPGTPVVTVMASDNDLGDNSKITYYL-----AETEHQFTVNPETGVISTT 328
            :|:||.|:..:.|||..||.:..|.|.|.|.|.|.::.|.|     ||..|.|.|:|::|.:...
  Rat   342 VFEHSVYSTKVPETAPNGTVLFHVQALDPDEGSNGEVWYSLSNSTPAELRHLFHVHPKSGEVQVA 406

  Fly   329 ERVNCPQQTNVKSSASQKSCVFTVFARDHGSPRQDGRTYVTVNLLDTNDHDPIISFRFFPDGGKV 393
            ..:. |.:|.:::         .:.|||.|:......|.:.|.:.|.|||.|.|.|..|     :
  Rat   407 ATLG-PPETLLEA---------FIEARDEGTFSLASTTKLLVEVTDVNDHAPQIEFMTF-----L 456

  Fly   394 ATVDENAVNGTVVAAVAVKDSDSGLNGRTSVRIVSGNELGHFRLEEAADLHI-VRVNGVLDREEI 457
            ::|.|:|..|||:|.::|||.|.|.||:.:   .|.:..|.|:|:.:.|.:. :..:|.||||..
  Rat   457 SSVLEDAAPGTVIALLSVKDEDLGSNGKVT---CSMSSKGPFQLKASFDSYYKLLTDGPLDRERA 518

  Fly   458 GKYNLTVVAMDQGTPARTTTAHLIIDVNDVNDHEPVFEKSEYSAVLSELAPTGSFVASITATDED 522
            .:|.:.:.|.|.|:|..:|...|.:.|.||||:.|.|.:.:....:.|....|..:.|:.|.|.|
  Rat   519 SEYQILIAASDGGSPPLSTRRTLTVSVADVNDNTPSFPQPQQELFVVENNSPGVSLGSVFAQDPD 583

  Fly   523 TGVNAQVHYDIL----SGNEL--KWFSMDPLTGLIVTTGPLDREIRDTVELSISARDGGPNPKFA 581
            .|.|..|.|::|    .|..|  ...|::|.:|:|......|.|........:..||||..|:.|
  Rat   584 LGENGLVLYELLDVISEGMPLPSSLVSVEPTSGVITAKNSFDFEQLRGFHFQVEGRDGGIPPRSA 648

  Fly   582 YTQLKVIILDENDEAPQF---SQREQNV---TLGEDAPPQTIVALMTATDHDQGTNGSVTFALAP 640
            ...:.:.::|.||.||..   ..|..::   .:...|..:.:|..:.|.|.|.|:|..:::.::.
  Rat   649 TVTVNLFVVDRNDNAPDILFPLPRNGSIPVERVSRSARAEHLVTKVVAEDADSGSNAWLSYHISQ 713

  Fly   641 SVERLYPLQFALDALTGQLTTRR---PLDREKMSQYEISVIARDQGAPTPQSATATVWLNVADVN 702
            :.:...   |.:...||:|.|.|   |.|..|.|   :.|:.:|.|.| |.|::.|:.:.:::. 
  Rat   714 ASDSSL---FRISVNTGELRTARLVFPTDAVKQS---VVVVVQDHGEP-PLSSSVTLGVLLSNA- 770

  Fly   703 DNDPQFYPRHYIYSLADDDDDIKLKKEVEKERILLHVTASDKDDGDNALIEYRLESGGEGLFQLD 767
              .||.:|         |.:||                               .|.|    .||.
  Rat   771 --APQVFP---------DFEDI-------------------------------WEPG----TQLS 789

  Fly   768 ARS---------------GAISL-----RGDAP----ASMHWKP----HYKLLVSARDAGQRRSQ 804
            ||:               |.:..     ...:|    .|....|    |.:.:.|:      ...
  Rat   790 ARNLYLVIALVCISFLFLGCLFFFVCFKSNQSPDCCSQSFCHSPENVRHERTMASS------HCV 848

  Fly   805 QDAIVEIVLKSKLEMLECGQAQAG-GY---------EFQMVEDHEQQRNSQP----NREVGIVQV 855
            ..|.:::....:|......||..| ||         ::|:.:    .||..|    |..:..:|:
  Rat   849 TSATIDVTAVERLCQTHLYQASLGPGYGSNSLLLHGKYQVAD----LRNLAPGIGLNLPISCIQI 909

  Fly   856 KSTNGKANSHIEYDIIQGDRAQNFRIDTRSGRITTARPLDREEQANYRLTILASSSSSSSAAASS 920
            ::                          |.|..|....:.|:...::|.     |:|..:...||
  Rat   910 RN--------------------------RKGDHTNVNAMPRQPNPDWRY-----SASLRAGMHSS 943

  Fly   921 VSYGQCIVNIAIIDLNDNAPVFALDRESEPTISL----PENAAVGQEIYLSRVRDRDAGVNSRIS 981
            |.    :....|:......|     .:..||:|.    ||...|...:        .|||||.  
  Rat   944 VH----LEEAGILRAGPGGP-----DQQWPTVSSATPEPEAGEVSPPV--------GAGVNSN-- 989

  Fly   982 YSLTNNPNQQFRIGPVTGVLYLQRPIRAEPGSLIHVELMATDAGSPPLSS 1031
                   :..|:.||       ..|.:..||.|....::   .|||.:.|
  Rat   990 -------SWTFKYGP-------GNPKQPGPGELPDKFII---PGSPAIIS 1022

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 27/95 (28%)
Cadherin_repeat 163..266 CDD:206637 36/102 (35%)
Cadherin_repeat 275..378 CDD:206637 31/107 (29%)
Cadherin_repeat 393..490 CDD:206637 35/97 (36%)
Cadherin_repeat 498..594 CDD:206637 26/101 (26%)
Cadherin_repeat 603..704 CDD:206637 24/106 (23%)
Cadherin_repeat 735..814 CDD:206637 13/106 (12%)
Cadherin 843..>907 CDD:394985 9/67 (13%)
Cadherin 950..1026 CDD:394985 18/79 (23%)
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdha4XP_063133126.1 None
Blue background indicates that the domain is not in the aligned region.

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