DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ft and cdhr2

DIOPT Version :9

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:XP_017214654.2 Gene:cdhr2 / 100536704 ZFINID:ZDB-GENE-190529-1 Length:1301 Species:Danio rerio


Alignment Length:1183 Identity:312/1183 - (26%)
Similarity:476/1183 - (40%) Gaps:308/1183 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1834 EDLQIGHTISTLRAHDPDTLGSVTFLLMDGHDGKFLLEPSTGKLILNDTLDRETKSKYELRIRVS 1898
            |||:||.....:.|.|||. ..:|:.:...:.|.|.:|..||.:.:...|||||.....:...|:
Zfish    32 EDLRIGEYAFKIVATDPDD-DPLTYKIAGTNAGFFTVEEHTGIVTIKILLDRETNDIMNIDAIVN 95

  Fly  1899 DGVQYTEAYAT--IQVSDTNDNPPLFEDTVYSFDIPENAQRGYQVGQIVARDADLGQNAQLSY-- 1959
            ||| |.:...|  |.|.|.|||.|:|....|:.::.||...|:.:....|.|:|.||...:||  
Zfish    96 DGV-YDDVRKTIYINVEDANDN
IPIFNGLPYNKEVLENTTVGFVLFTASATDSDFGQAGIVSYKI 159

  Fly  1960 -GVVSDWANDVFSLNPQTGMLTLTARLDY-EEVQHYILIVQAQDNG------QPSLSTTITVYCN 2016
             .||.| ..|:||:...||::||...|:: |:...|.:.:.|.|.|      :...|::...:..
Zfish   160 DEVVPD-DKDMFSIVAATGVVTLVGNLNFTEKSPFYQIRINASDGGGELYGEEVVQSSSAIAFIT 223

  Fly  2017 VLDLNDNAPIFDPMSYSSEVFENVPIATEVVTVSAKDIDSGNNGLIEYSITAGDVDSEFGIDSN- 2080
            |.|:.|..|.|..:..::.|.||..:.|.|.||.|:|.|:|.|..|.:||...:....|.||:| 
Zfish   224 VKDVPD
IDPQFLNLPNNAAVEENTGVGTTVFTVRARDPDTGVNDKITFSIDKTNASDLFRIDTNT 288

  Fly  2081 GTIRTRRNLDREHRSTYTLTVTARDCADEFASFSELEETQLKLKYRSPRKYQQTRQEFLAHQKQQ 2145
            |.:.....:|||                                            |.|      
Zfish   289 GIVSVNAEIDRE--------------------------------------------ELL------ 303

  Fly  2146 RLSSTVKVTILIKDVNDEVPVFISANETAIMENVAINTVVIAVKAVDNDEGRNGYIDYLMKEARD 2210
                .:..|:::|         |.|:||  |.||                  ||.|         
Zfish   304 ----NISATVVLK---------IKASET--MPNV------------------NGVI--------- 326

  Fly  2211 EDMGQSDPLPFSLNPTDGQLRVVDALDRELRSSYLLNITARDRGEPPQSTESQLLIRILDENDNS 2275
                                                           .||..:|.|.|.||||||
Zfish   327 -----------------------------------------------ASTIGELQISIKDENDNS 344

  Fly  2276 PVF---------DPKQYSASVAENASIGAMV--LQVSATDVDEGANGRIRYSIVLGDQNHD-FSI 2328
            |.|         ....:..:|.|::|.|..|  |.:...|:|.|.|.  .:::.|...:.| |.:
Zfish   345 PEFYECEGEACMKKDNFEGNVNEHSSTGLAVANLNIKVKDLDGGENS--TFNLHLDGPDKDAFRV 407

  Fly  2329 SEDTG--------VVRVAKNLNYERLSRYSLTVRAEDCALENPAGDTAELTINILDINDNRPTFL 2385
            |..:|        :|:..:.::||.....::.:.|.|...:..:  ||.:||::.|.|||.|||.
Zfish   408 SPTSGMGESTVQVLVKDPQAVDYEIKQIMNVQIIAVDANADFTS--TATVTIHLNDTNDNFPTFE 470

  Fly  2386 DSPYLARVMENTVPPNGGYVLTVNAYDADTPPLNSQVRYFLKEGDSDLFRINASSGDIALLK--P 2448
            ...|..:|.|:.  .||..|.|:.|.|||...........:.|....||.::..:|.|.:..  .
Zfish   471 KELYKEKVFEHC--ENGTIVATIIATDADAFDEGKITYRLMPESIRSLFGVHEKTGTIYVTNGDT 533

  Fly  2449 LDREQQSEYTLTLVAMDTGSPPLTGTGIVRVEVQDINDNDPVFELQSYHATVRENLPSGTHVLTP 2513
            ||.|....|||||.|.|:|:.  |||.:|.:.:.|||||.|......|.|.|:||......:   
Zfish   534 LDWEVTKSYTLTLQAFDSGNN--TGTTVVEISILDINDNAPEMNRDIYEAFVQENEDFKIQI--- 593

  Fly  2514 RATDKDE--GLNAKLRFNLLGE--HMHRFHIDSETGEISTATTLDRE-----ETSVYHLTLMAQD 2569
            :|||:||  .||:::::.:..|  ....|.|..|:|.::....||||     :..|..|.::|.|
Zfish   594 QATDRDEPKTLNSEVQYRISEESTFSSNFTIGLESGLLTNKGDLDREAIDISQNGVIQLIVIASD 658

  Fly  2570 SSITEPRASSVNLTISVSDVNDNIPKF-DSTTYNVAVPERISKGEFVFGARALDLDDGE-NAVVH 2632
            .. |..|:||..:.|||.|.|||.|:: ||:.|...|.|.: ||.:|....|.|.|..: |..:.
Zfish   659 LG-TPSRSSSAKVNISVGDANDNAPRYLDSSPYEFRVKESV-KGIYVGPVHAHDADQTDFNNRIF 721

  Fly  2633 YTISGRDQHYFDINTK----------TGVVSTKLELKTKTKSHDDLTYTIVISAMDQGEQSLSSK 2687
            ::|:......|.|.::          |...|.:|:.::..|.     ||:.:.|.|.|::  |..
Zfish   722 FSITDGSFGSFIIYSEAFSKGYRGNITVDPSVELDYESNRKE-----YTLKVQASDLGQK--SDV 779

  Fly  2688 AELTVILR-----PPELFPTFAYMANSHFAMSEDVRPGKMITKVSATS----PKKGLVGK----- 2738
            ||:.:|:.     |||.                   |..||.||...:    |...:.||     
Zfish   780 AEVHIIVEDVNDTPPEF-------------------PSGMILKVDENTTLPVPVDTIKGKDVDTN 825

  Fly  2739 --IRYAI------AGGIMG----DSLRVDPNSGLLSVGQDGLDYE------LT-HLYEIWIEAAD 2784
              :.|.:      ..|.:|    :...|:.|..:::..:..:|||      || .:.:|:.|.. 
Zfish   826 HSLIYELVSTKCQCNGTIGPCPEEWFIVESNGDIIANTEYVIDYEKCDVVFLTARVVDIYTEVG- 889

  Fly  2785 GDTPSLRSVTLITLNVTDANDNAP--VMEQLIYNAEVLEEESPPQLIAVVKASDRDSGDN----- 2842
                |..|..::|:|:.|.|||||  |..|..| ..|:|:......:|...|:|||:.||     
Zfish   890 ----SNSSEGVVTINIVDINDNAPEFVFLQDFY-VVVIEKVDTGTSVARAYATDRDTADNNKKTK 949

  Fly  2843 ------------GNVIYRL--------QNDFDGTFEITESGEIYTRMRLDREEIGDYAFVVEAVD 2887
                        ||....|        |.|.:|.:    :..|.::..:|..:.|.:...||||:
Zfish   950 FQVNKITFIGSEGNTTESLFLYADNFDQEDAEGRY----TAYIRSQKAMDNNKRGKFMVEVEAVN 1010

  Fly  2888 QGVPHMTGTASVL 2900
             |....||...:|
Zfish  1011 -GKLSTTGVVELL 1022

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637
Cadherin_repeat 163..266 CDD:206637
Cadherin_repeat 275..378 CDD:206637
Cadherin_repeat 393..490 CDD:206637
Cadherin_repeat 498..594 CDD:206637
Cadherin_repeat 603..704 CDD:206637
Cadherin_repeat 735..814 CDD:206637
Cadherin 843..>907 CDD:278457
Cadherin 950..1026 CDD:278457
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637 30/85 (35%)
Cadherin_repeat 1926..2023 CDD:206637 30/106 (28%)
Cadherin_repeat 2031..2162 CDD:206637 27/131 (21%)
Cadherin_repeat 2172..2274 CDD:206637 16/101 (16%)
Cadherin_repeat 2282..2380 CDD:206637 26/108 (24%)
Cadherin_repeat 2388..2487 CDD:206637 34/100 (34%)
Cadherin_repeat 2495..2592 CDD:206637 34/105 (32%)
Cadherin_repeat 2600..2694 CDD:206637 25/104 (24%)
Cadherin_repeat 2710..2806 CDD:206637 26/123 (21%)
Cadherin_repeat 2814..2909 CDD:206637 27/112 (24%)
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:278457
Cadherin 3129..3220 CDD:278457
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:278437
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:278483
LamG 4428..4543 CDD:238058
cdhr2XP_017214654.2 Cadherin_repeat 27..116 CDD:206637 30/85 (35%)
Cadherin_repeat 124..229 CDD:206637 30/105 (29%)
Cadherin_repeat 240..343 CDD:206637 45/241 (19%)
Cadherin_repeat 361..465 CDD:206637 26/107 (24%)
Cadherin_repeat 474..570 CDD:206637 34/99 (34%)
Cadherin_repeat 578..680 CDD:206637 34/105 (32%)
Cadherin_repeat 689..791 CDD:206637 26/109 (24%)
CA 820..909 CDD:214520 21/93 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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