DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sr-CI and ltk

DIOPT Version :10

Sequence 1:NP_477102.1 Gene:Sr-CI / 33621 FlyBaseID:FBgn0014033 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001006661.2 Gene:ltk / 564470 ZFINID:ZDB-GENE-030616-115 Length:1530 Species:Danio rerio


Alignment Length:325 Identity:84/325 - (25%)
Similarity:127/325 - (39%) Gaps:88/325 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 ENLSLRADVVCHDGYVLVGGRTAYCDGERWST---QLGSCRRSNHTRDHSCDF-----ESEDQ-- 143
            ::|.|: :.|..|.||.:|.     |.|::|:   ..|.|..    :...|||     |.||:  
Zfish   212 DSLELK-NCVMGDDYVDLGS-----DCEKYSSLQCHSGGCIE----KQRVCDFHTDCPEGEDEGL 266

  Fly   144 -----------------CGWEAETTFRRPWKRVS---TVSDIHSLRTGPRHDHTFKNESGGHYMR 188
                             |||.|..| :..|:.||   .:.|.|.|.|      |.|| :.||::.
Zfish   267 ICSTLPLGSYCSFELGSCGWSAADT-QSSWRLVSGQQLIEDTHLLGT------TLKN-TQGHFLF 323

  Fly   189 METQMGAYGSYH---LLSPIYPRSLTLKTACCFRFHYFMFGAGVDNLVVSV--KPVSMPMATMWN 248
            ::.:  .:|...   :.||..|.::: ...|..:|..:.:|.....:::||  ...|.| |.:|.
Zfish   324 LKVR--GHGDEREALVQSPALPSTIS-NQDCQLQFSLYRYGDFNGTVLLSVVESGASAP-ALIWE 384

  Fly   249 RFRANCSKFEISGQQGTQWLEHTISIDEMQEDFQVIFTATDARSQFGDIAIDDVKLMTG------ 307
            |          ||.....|.|.|:.|.|:...|.:...|........|||:||:.|...      
Zfish   385 R----------SGHWKDAWQEITLPITEILNGFHLKVQAFWTSGSKADIALDDISLSAACFDTEL 439

  Fly   308 SECGTNG------FSTTTEPTAPTGSNEQPLVYDMMSC--SGRCGTS----ISASNITNNGIVMG 360
            :|....|      ||...||:|   |...|:.:...||  ||..|.:    .||...||..:|:|
Zfish   440 NELLHEGLPHDLDFSPLPEPSA---SEASPITWWFTSCGASGPFGPTQAQCDSAYRNTNVSVVVG 501

  Fly   361  360
            Zfish   502  501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sr-CINP_477102.1 CCP 22..72 CDD:214478
CCP 77..125 CDD:214478 11/38 (29%)
MAM 131..308 CDD:214533 52/214 (24%)
Somatomedin_B 335..385 CDD:470596 11/32 (34%)
ltkNP_001006661.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 635..671
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1313..1334
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1389..1420
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1492..1530
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.