DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sr-CI and si:ch211-106h4.4

DIOPT Version :9

Sequence 1:NP_001285599.1 Gene:Sr-CI / 33621 FlyBaseID:FBgn0014033 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_017207311.2 Gene:si:ch211-106h4.4 / 559790 ZFINID:ZDB-GENE-070705-14 Length:2402 Species:Danio rerio


Alignment Length:653 Identity:148/653 - (22%)
Similarity:217/653 - (33%) Gaps:222/653 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 CDFESEDQCGWEAETTFRRPWKRVSTVSDIHSLRTGPRHDHTFKNESGGHYMRMETQMGAYGSYH 200
            ||||: |.|.|...:..:..|:|  ..:...:..|||..|||...|. |.||.:|...|...||.
Zfish  1212 CDFET-DSCDWTDISVGQFVWER--DQNGTTTANTGPSVDHTTGTEL-GWYMAVEASHGDQNSYA 1272

  Fly   201 LLSPIYPRSLTLKTA---CCFRFHYFMFGAGVDNLVVSVK--PVSMPMATMWNRFRANCSKFEIS 260
            .|     :|..:|.|   |...|:|.|||.|:..:.|.::  |...|:  .|           :|
Zfish  1273 AL-----QSPAMKEASNECLLEFYYHMFGEGIGEIKVFLQEGPRRTPL--WW-----------MS 1319

  Fly   261 GQQGTQWLEHTISIDEMQEDFQVIFTATDARSQFGDIAIDDVKLMTGSECGTNGFSTTTEPTAP- 324
            |..|.:|....:|:....:.|.::|.|:...|:.|||||||:..:   .|      |..||..| 
Zfish  1320 GNHGDEWRRAELSVGRTHQVFTLLFEASRTYSELGDIAIDDIAFL---NC------TVPEPHEPC 1375

  Fly   325 -----TGSN----EQPLVYDMMSCSGRCGTSISASNITNNGIVMGCG-----CNDECLSDET--- 372
                 |.||    |...|.|.   |..||......:....|....|.     |:.:....||   
Zfish  1376 QEGTFTCSNHVCVELNRVCDY---SDDCGDGTDEKHCDVRGFKHRCSFEHGMCSWDKSDLETGWV 1437

  Fly   373 ---------------------CCLNYL---EECTKELLTTTEDDISSLPPTVT----STSTSTTR 409
                                 ...:|:   .:.|.|:::||.  :.|...||.    |...|||.
Zfish  1438 LQKGEEAWPKHGPPRDHTRNIAAGHYITPAHDLTAEIISTTL--LPSSECTVRFYHYSHGDSTTA 1500

  Fly   410 KSTTTTTT------------STTTTSTTTTKRPTTTTTTTKATTTKRTTTTKKPTTTST------ 456
            :...|..|            ...|.|....:...|.:|:.|:....|.....:..|..|      
Zfish  1501 RLIVTLRTLLNGDDDVIIWDKPLTQSYLWHRAEVTFSTSVKSKIVFRYVGNGEAHTLQTAVDDIS 1565

  Fly   457 ----------------TPKPTTT--TSTTPKSTTSTTSTTSTTP--------------------- 482
                            ||:||.|  |:||||     |...||||                     
Zfish  1566 FSVTCSHDPDNSELPDTPEPTMTPATATTPK-----TEAPSTTPILNPCKENEFHCWRSDGVICI 1625

  Fly   483 TTTTTINVFTTKKTTIMIPTSSTEKT---------------TGINTTMKTRKRITWNVD-PQDI- 530
            .:||..|.      .:..|....|:|               .|::.....|.:...|.| |.|. 
Zfish  1626 ASTTQCNY------VVDCPLGEDEETCGPCNFENGLCQWHDIGVSPNKWERVKAPDNPDLPNDHT 1684

  Fly   531 --EGH-MDTS--GSTPNPAL----------VVLYLLL--------AIVLVVVL------------ 560
              .|| |.|:  |.:.|.||          ....||.        |..|.|:|            
Zfish  1685 TGTGHYMQTNIIGPSKNEALFQSPSLPVSSAYCQLLFHFHMGTGCAGNLSVILQKGEDDRKLLWS 1749

  Fly   561 --ANVVNRWI---IPITGSKTSSEKAVRFKKAFDSLKKQR-----KRNSMDDQPL--CDSDNDDV 613
              ::..::|:   :|:  .|......:.|.... ||.|:.     :..::||...  |:.|:...
Zfish  1750 RSSSTSSQWVPEQLPV--GKQDQPYRIIFSSQI-SLGKENTQCSPRTTALDDFSFHSCEKDHQPP 1811

  Fly   614 EYF 616
            ::|
Zfish  1812 DFF 1814

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sr-CINP_001285599.1 CCP 22..72 CDD:214478
CCP 77..125 CDD:214478
MAM 131..308 CDD:214533 54/176 (31%)
MAM 136..308 CDD:99706 54/176 (31%)
Somatomedin_B 335..385 CDD:295334 11/81 (14%)
si:ch211-106h4.4XP_017207311.2 LDLa 18..53 CDD:238060
MAM 56..210 CDD:332481
MAM 223..378 CDD:99706
MAM 384..545 CDD:99706
MAM 551..708 CDD:99706
MAM 732..888 CDD:99706
MAM 894..1045 CDD:306977
MAM 1050..1199 CDD:99706
MAM 1212..1365 CDD:99706 54/177 (31%)
LDLa 1375..1409 CDD:238060 9/36 (25%)
MAM 1418..1571 CDD:332481 26/154 (17%)
LDLa 1609..1646 CDD:238060 5/42 (12%)
MAM 1645..1804 CDD:332481 30/161 (19%)
MAM 1818..1974 CDD:99706
MAM 1981..2138 CDD:99706
MAM 2144..2306 CDD:99706
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 66 1.000 Domainoid score I9895
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006092
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.000

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