DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sr-CI and Sr-CIV

DIOPT Version :9

Sequence 1:NP_001285599.1 Gene:Sr-CI / 33621 FlyBaseID:FBgn0014033 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_608789.1 Gene:Sr-CIV / 33576 FlyBaseID:FBgn0031547 Length:406 Species:Drosophila melanogaster


Alignment Length:399 Identity:200/399 - (50%)
Similarity:264/399 - (66%) Gaps:19/399 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEFFWTLAVIVIYCIGHIHGRCERSIDLDNGSINYRQRNVVRFRCNRGYTLQGTVMQTCDRDGRL 65
            |...|  |:::|..:...:.||..|:.|::||......::: |.|::||.|||:.:.|||| |..
  Fly     1 MILLW--AIVLISSVDRTNARCLESVHLEHGSTEIVNGSII-FHCDQGYFLQGSKVFTCDR-GIP 61

  Fly    66 RGEKPFCASRGCARPEDPENGHVENLSLRADVVCHDGYVLVGGRTAYCDGERWSTQLGSCRRSNH 130
            ||:|||||..||...|..:||.|.|..::|.::|.||:.|||.|.||||||:||||||||.....
  Fly    62 RGKKPFCAKSGCQEYEQIQNGFVLNAPMKAKIICSDGHGLVGNRIAYCDGEKWSTQLGSCALRRQ 126

  Fly   131 TRDHSCDFESEDQCGWEAETTFRRPWKRVSTVSDIHSLRTGPRHDHTFKNESGGHYMRMETQMGA 195
            |.|.||||||||.|||.||.:|...|||||||:|.||.:|||:.||||:|:|.|||:||||:..|
  Fly   127 TIDVSCDFESEDMCGWTAELSFLGTWKRVSTVADFHSEKTGPQKDHTFQNQSIGHYVRMETESDA 191

  Fly   196 YGSYHLLSPIYPRSLTLKTACCFRFHYFMFGAGVDNLVVSVKPVSMPMATMWNRFRAN----CSK 256
            :|:||.|||:||:.|:|..| ||:|||||||:||.:|:||:||||:   |:.:.|:.|    ..:
  Fly   192 FGTYHFLSPLYPKELSLSGA-CFQFHYFMFGSGVGSLLVSIKPVSV---TIGDIFKTNHPYKFDQ 252

  Fly   257 FEISGQQGTQWLEHTISIDEMQEDFQVIFTATDARSQFGDIAIDDVKLMTGSECGTNGFSTTTEP 321
            |.::|.||.:||||||.|::|.|||||||||||||||:|||||||||||...||.... :...||
  Fly   253 FVMTGSQGARWLEHTIDINKMDEDFQVIFTATDARSQYGDIAIDDVKLMAAKECARRS-TFIEEP 316

  Fly   322 TAPTGSNE--QPLVYDMMSCSGRCGTSISASNITNNGIVMGCGCNDECLSDETCCLNYLEECTKE 384
            ..|...::  ..|.|.|..||||||.........|.    ||.|.:.||.:..|||||::||.|:
  Fly   317 KKPIEESDITDSLGYQMTDCSGRCGQDFVRGRYINE----GCRCQESCLVNGNCCLNYVKECHKD 377

  Fly   385 LLTTTEDDI 393
            |:....:::
  Fly   378 LVIAPYNEL 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sr-CINP_001285599.1 CCP 22..72 CDD:214478 21/49 (43%)
CCP 77..125 CDD:214478 26/47 (55%)
MAM 131..308 CDD:214533 113/180 (63%)
MAM 136..308 CDD:99706 110/175 (63%)
Somatomedin_B 335..385 CDD:295334 21/49 (43%)
Sr-CIVNP_608789.1 MAM 132..306 CDD:279023 110/177 (62%)
MAM 132..301 CDD:99706 108/172 (63%)
Somatomedin_B 336..376 CDD:279385 19/43 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45470080
Domainoid 1 1.000 66 1.000 Domainoid score I9895
eggNOG 1 0.900 - - E1_2CMY0
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 88 1.000 Inparanoid score I5116
Isobase 1 0.950 - 0 Normalized mean entropy S8224
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006092
OrthoInspector 1 1.000 - - mtm9576
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X7243
109.840

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