DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sr-CI and Malrd1

DIOPT Version :10

Sequence 1:NP_477102.1 Gene:Sr-CI / 33621 FlyBaseID:FBgn0014033 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001274547.3 Gene:Malrd1 / 100361092 RGDID:2320868 Length:2117 Species:Rattus norvegicus


Alignment Length:417 Identity:109/417 - (26%)
Similarity:151/417 - (36%) Gaps:95/417 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FWTLAVIVIYCIGHIHGRCERSIDLDNGSINYRQRNVV-RFRCNRGYTLQGTVMQTCDRDGRLRG 67
            ||      .|..|...|..|..:.|:|.    |....: |...|:|.......:|.    |||  
  Rat   695 FW------FYNYGLSVGAAELQLHLENS----RDTTALWRVLYNQGNQWSEATIQL----GRL-- 743

  Fly    68 EKPFCASRGCARPEDPENGHVENLSL-------RADVVCHDGYVLVGGRTAYCD--GERWSTQLG 123
            .:||..:             :|.:||       ..|.:|.:...| ......||  ...|..|..
  Rat   744 TQPFYLT-------------LEKVSLAVYRGVSAVDDICFENCAL-PPPVESCDEPDHFWCRQTK 794

  Fly   124 SCRRSNH-------TRDHS----------CDFESEDQCGWEAETTFRRPWKRVSTVSDIHSLRTG 171
            :|...:.       ..||:          ||||| ..|.||..|.....|.|  :.....:|.||
  Rat   795 ACIGKHQLCDLVDDCGDHTDEIGCAPELQCDFES-GICNWEQSTEDDFNWTR--SQGPTSTLNTG 856

  Fly   172 PRHDHTFKNESGGHYMRMETQ--MGAYGSYHLLSPIYPRSLTLKTACCFRFHYFMFGAGVDNLVV 234
            |..|||. ..:.|||:.:||.  ........|||||.  :.|....|.||..|.|||..|..|.|
  Rat   857 PMKDHTL-GTANGHYLYIETSEPQAFQDKAVLLSPIL--NATEANGCSFRLFYHMFGKHVYRLAV 918

  Fly   235 SVKPVSMPMATMWNRFRANCSKFEISGQQGTQWLEHTISIDEMQEDFQVIFTATDARSQFGDIAI 299
            ..:        :|:..|... .::|.|.||.:|:...:||.. :..||::..|:......|||||
  Rat   919 YQR--------IWSNSRGQL-LWQIFGDQGNRWIRKHLSITS-RHPFQILIVASVGDGFTGDIAI 973

  Fly   300 DDVKLMTGSECGTN---GFSTTTEPTAPTGSNEQPLVYDMMSC--SGRCGTSISASNITNNGIVM 359
            ||:..|..:....|   ...:..|.:.|..........|...|  :|.|           .|.:.
  Rat   974 DDLSFMDCTLYPDNLPMDIPSPPEISVPVTLPPNNCTDDQFVCRSNGHC-----------VGKIQ 1027

  Fly   360 GCGCNDECL--SDETCCLNYLEECTKE 384
            .|....:|:  |||:.|:  ||.||.|
  Rat  1028 KCDFKYDCIDKSDESSCV--LETCTFE 1052

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sr-CINP_477102.1 CCP 22..72 CDD:214478 12/50 (24%)
CCP 77..125 CDD:214478 10/56 (18%)
MAM 131..308 CDD:214533 61/188 (32%)
Somatomedin_B 335..385 CDD:470596 16/54 (30%)
Malrd1NP_001274547.3 LDLa 31..60 CDD:238060
MAM 66..219 CDD:99706
MAM 229..377 CDD:99706
MAM 436..591 CDD:99706
MAM 613..768 CDD:459878 22/101 (22%)
LDLa 785..818 CDD:238060 5/32 (16%)
MAM 824..980 CDD:99706 58/171 (34%)
LDLa 1009..1044 CDD:238060 10/45 (22%)
MAM 1049..1213 CDD:99706 3/4 (75%)
LDLa 1223..1255 CDD:197566
MAM 1267..1420 CDD:99706
LDLa 1443..1477 CDD:238060
MAM 1481..1633 CDD:99706
LDLa 1646..1679 CDD:238060
MAM 1689..1849 CDD:459878
LDLa 1863..1898 CDD:238060
LDLa 1907..1938 CDD:197566
LDLa 1946..1982 CDD:238060
Blue background indicates that the domain is not in the aligned region.

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