DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sr-CI and Malrd1

DIOPT Version :9

Sequence 1:NP_001285599.1 Gene:Sr-CI / 33621 FlyBaseID:FBgn0014033 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001274547.3 Gene:Malrd1 / 100361092 RGDID:2320868 Length:2117 Species:Rattus norvegicus


Alignment Length:417 Identity:109/417 - (26%)
Similarity:151/417 - (36%) Gaps:95/417 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FWTLAVIVIYCIGHIHGRCERSIDLDNGSINYRQRNVV-RFRCNRGYTLQGTVMQTCDRDGRLRG 67
            ||      .|..|...|..|..:.|:|.    |....: |...|:|.......:|.    |||  
  Rat   695 FW------FYNYGLSVGAAELQLHLENS----RDTTALWRVLYNQGNQWSEATIQL----GRL-- 743

  Fly    68 EKPFCASRGCARPEDPENGHVENLSL-------RADVVCHDGYVLVGGRTAYCD--GERWSTQLG 123
            .:||..:             :|.:||       ..|.:|.:...| ......||  ...|..|..
  Rat   744 TQPFYLT-------------LEKVSLAVYRGVSAVDDICFENCAL-PPPVESCDEPDHFWCRQTK 794

  Fly   124 SCRRSNH-------TRDHS----------CDFESEDQCGWEAETTFRRPWKRVSTVSDIHSLRTG 171
            :|...:.       ..||:          ||||| ..|.||..|.....|.|  :.....:|.||
  Rat   795 ACIGKHQLCDLVDDCGDHTDEIGCAPELQCDFES-GICNWEQSTEDDFNWTR--SQGPTSTLNTG 856

  Fly   172 PRHDHTFKNESGGHYMRMETQ--MGAYGSYHLLSPIYPRSLTLKTACCFRFHYFMFGAGVDNLVV 234
            |..|||. ..:.|||:.:||.  ........|||||.  :.|....|.||..|.|||..|..|.|
  Rat   857 PMKDHTL-GTANGHYLYIETSEPQAFQDKAVLLSPIL--NATEANGCSFRLFYHMFGKHVYRLAV 918

  Fly   235 SVKPVSMPMATMWNRFRANCSKFEISGQQGTQWLEHTISIDEMQEDFQVIFTATDARSQFGDIAI 299
            ..:        :|:..|... .::|.|.||.:|:...:||.. :..||::..|:......|||||
  Rat   919 YQR--------IWSNSRGQL-LWQIFGDQGNRWIRKHLSITS-RHPFQILIVASVGDGFTGDIAI 973

  Fly   300 DDVKLMTGSECGTN---GFSTTTEPTAPTGSNEQPLVYDMMSC--SGRCGTSISASNITNNGIVM 359
            ||:..|..:....|   ...:..|.:.|..........|...|  :|.|           .|.:.
  Rat   974 DDLSFMDCTLYPDNLPMDIPSPPEISVPVTLPPNNCTDDQFVCRSNGHC-----------VGKIQ 1027

  Fly   360 GCGCNDECL--SDETCCLNYLEECTKE 384
            .|....:|:  |||:.|:  ||.||.|
  Rat  1028 KCDFKYDCIDKSDESSCV--LETCTFE 1052

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sr-CINP_001285599.1 CCP 22..72 CDD:214478 12/50 (24%)
CCP 77..125 CDD:214478 10/56 (18%)
MAM 131..308 CDD:214533 61/188 (32%)
MAM 136..308 CDD:99706 59/173 (34%)
Somatomedin_B 335..385 CDD:295334 16/54 (30%)
Malrd1NP_001274547.3 LDLa 31..60 CDD:238060
MAM 66..219 CDD:99706
MAM 229..377 CDD:421533
MAM 436..591 CDD:99706
MAM 613..768 CDD:99706 22/101 (22%)
LDLa 785..818 CDD:238060 5/32 (16%)
MAM 824..980 CDD:99706 58/171 (34%)
LDLa 1009..1044 CDD:238060 10/45 (22%)
MAM 1049..1213 CDD:99706 3/4 (75%)
LDLa 1223..1255 CDD:197566
MAM 1267..1420 CDD:99706
LDLa 1443..1477 CDD:238060
MAM 1481..1633 CDD:99706
LDLa 1646..1679 CDD:238060
MAM 1689..1850 CDD:99706
LDLa 1863..1898 CDD:238060
LDLa 1907..1938 CDD:197566
LDLa 1946..1982 CDD:238060
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 77 1.000 Domainoid score I8632
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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