DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sr-CI and malrd1

DIOPT Version :9

Sequence 1:NP_001285599.1 Gene:Sr-CI / 33621 FlyBaseID:FBgn0014033 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001274478.1 Gene:malrd1 / 100148465 ZFINID:ZDB-GENE-140106-257 Length:1793 Species:Danio rerio


Alignment Length:468 Identity:113/468 - (24%)
Similarity:156/468 - (33%) Gaps:147/468 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FWTLAVIVIYCIGHIHGRCERSIDLD-NGSIN------YRQRN-----VVRF-RCNRGY------ 49
            ||.      |..||..|..|..:.:| :.||.      |.|.|     ||:. |.||.:      
Zfish   352 FWH------YNSGHSVGAAEMHLLIDGSDSITTLWQTLYNQGNQWHPVVVQIGRQNRPFYISFAK 410

  Fly    50 ----------TLQGTVMQTCDRDGRLRGEKPFCASRGCARPEDPENGHVE---NLSLRADVV--C 99
                      .|...:...|....         |...||.|:....|..:   :.|...|::  |
Zfish   411 LSLAVYEGVSALDDIIFHNCSLPE---------AVETCATPDHLHCGQSKACVSYSQICDLIDDC 466

  Fly   100 HDGYVLVGGRTAYCDGERWSTQLGSCRRSNHTRDHSCDFESEDQCGW---EAETTFRRPWKRVST 161
            .||          .|.|....:|            .|||| |..|.|   ..|..|  .|..:. 
Zfish   467 GDG----------TDEENCLPEL------------MCDFE-EGLCNWTQDHEEDMF--DWTHIQ- 505

  Fly   162 VSDIHSLRTGPRHDHTFKNESGGHYMRMET---QMGAYGSYHLLSPIYP---RSLTLKTACCFRF 220
             ....:..|||..||| :..:.||::.:|:   |.....:..:..|..|   |....|..|.|||
Zfish   506 -GPTPTFNTGPWKDHT-RASADGHFLYIESSDPQKFKDTAVLISQPFLPTPRRGPEPKPPCVFRF 568

  Fly   221 HYFMFGAGVDNLVVSVKPVSMPMAT-MWNRFRANCSKFEISGQQGTQWLEHTISIDEMQEDFQVI 284
            ||.|||..|..|.|.::..:..... :|.|:          |.||..|....:.|:. ...||::
Zfish   569 HYHMFGQHVFCLAVYMRTSNSGRGNLLWVRY----------GDQGNFWHRTILEINS-SHHFQIL 622

  Fly   285 FTATDARSQFGDIAIDDVKLMTGSECGTNGFS--------TTTEP-----TAPTGSNEQPLVYDM 336
            ...|......|||||||:     |..|...:.        :|:.|     |||:.|...    |.
Zfish   623 VEGTVGDDFRGDIAIDDL-----SFYGCQSYEGELPLEEPSTSAPVPTLSTAPSHSCPP----DQ 678

  Fly   337 MSC--SGRCGTSISASNITNNGIVMGCGCNDEC--LSDETCCLNYLEECTKELLTTTEDD----- 392
            ..|  :..|   ::.|.:        |....:|  .|||       |.|.||......|.     
Zfish   679 FVCLTTREC---VNLSQV--------CDFRPDCSDSSDE-------ELCVKEYCDFEGDSLCGWY 725

  Fly   393 ISSLPPTVTSTST 405
            :|.:||...|..|
Zfish   726 LSEIPPHAFSWQT 738

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sr-CINP_001285599.1 CCP 22..72 CDD:214478 14/78 (18%)
CCP 77..125 CDD:214478 12/52 (23%)
MAM 131..308 CDD:214533 53/186 (28%)
MAM 136..308 CDD:99706 53/181 (29%)
Somatomedin_B 335..385 CDD:295334 12/53 (23%)
malrd1NP_001274478.1 LDLa 22..56 CDD:238060
MAM 62..215 CDD:279023
MAM 62..215 CDD:99706
LDLa 232..266 CDD:238060
MAM 270..432 CDD:279023 20/85 (24%)
MAM 270..429 CDD:99706 19/82 (23%)
LDLa 441..475 CDD:238060 9/43 (21%)
MAM 481..642 CDD:279023 53/182 (29%)
MAM 481..642 CDD:99706 53/182 (29%)
LDLa 674..709 CDD:238060 10/56 (18%)
MAM 714..861 CDD:99706 6/25 (24%)
MAM 714..856 CDD:279023 6/25 (24%)
LDLa 883..916 CDD:238060
MAM 926..1081 CDD:279023
MAM 926..1081 CDD:99706
LDLa 1098..1132 CDD:238060
MAM 1136..1298 CDD:279023
MAM 1136..1297 CDD:99706
LDLa 1297..1332 CDD:238060
MAM 1339..1496 CDD:279023
MAM 1339..1496 CDD:99706
LDLa 1512..1547 CDD:238060
LDLa 1561..1595 CDD:238060
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 66 1.000 Domainoid score I9895
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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