DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ed and sns

DIOPT Version :9

Sequence 1:NP_001260013.1 Gene:ed / 33619 FlyBaseID:FBgn0000547 Length:1332 Species:Drosophila melanogaster
Sequence 2:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster


Alignment Length:1584 Identity:323/1584 - (20%)
Similarity:519/1584 - (32%) Gaps:493/1584 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 LIALVALSSTTLADES-----------IDTRENADLTLKCRFNDKYEANDFSFFWTRWTANPAQF 83
            |:|::.|:|..:...:           :...|.|:..::|...:...|       .:||.     
  Fly    54 LLAVIVLASAPVPSHAQQQKFRTTPHDLQVLEGAEAMMRCEVANVAGA-------VQWTK----- 106

  Fly    84 DNVAIGEVQLSSG---YRLDFQPERGIYDLQIKNVSYNRDNGRFECRIKAKGTGADVHQEFHNLT 145
            |..|:|...:..|   |.:....::|||:|:|.|.|.| |:..::|::......:.:... ..||
  Fly   107 DGFALGFSAVIPGFPRYSVLGDRKQGIYNLRISNASIN-DDADYQCQVGPARLNSAIRAN-AKLT 169

  Fly   146 VLTPPHPPVI---SPGNIAVATEDKPMELTCSSIGGSPDPTITWYREGSNTPLPA----TVLKGG 203
            |::||....|   |..:.....|::.::|.|......|...|.||| |:....|.    ||.:..
  Fly   170 VISPPASIEIKGYSHNSKVEVRENQDLQLKCIVANAKPAAQIVWYR-GNVEYKPEKREDTVEEST 233

  Fly   204 TKDQPTNATLSIIPRREDDGAKYKCVVRNRAMNEGKRLEATATLNVNYYPRVEVGPENPLRVE-- 266
            .|...|.::|.:.|..:||..:|.|..|::|::....:.||..|:|.|       |..|..:|  
  Fly   234 AKRFTTTSSLKLKPGPDDDYTEYTCQARHKALSPDMPMRATVQLSVLY-------PPGPPYIEGY 291

  Fly   267 -------RDRTAKLECNVDAKPKVPNVRWNRNGRFIS---------SSLVHTIHRVSVQDAGKYT 315
                   |.:|.:|.|..........:.|.:||..|.         |..::|....:..:..::.
  Fly   292 SAGETLRRGQTVELMCRSRGGNPPAQLIWYKNGSQIRMAYRTSGRLSENIYTFTAEAGDNKARFR 356

  Fly   316 CIADNGLGKTG-EQELILDILYPPMVVIESKTREAEEGDTVTIRCNVTANPAPVTIEWLKEN--- 376
            |.|.|.:.:.. :.|:.|.:|:.|..|......||..||.|.:.|....:..|..|:|:...   
  Fly   357 CEASNVMSQNPLKAEVELSVLFAPTHVTVMGPTEARVGDIVPLTCTTAPSNPPAEIKWMVGGRQV 421

  Fly   377 ---------SPDFRYNGDVLTLTSVRADHAGN-----YICRAVNIMQSQGMERSERVGNSTVALL 427
                     ||:    |...|.:::.|....|     .||..:|      |:.:|.| .||..:.
  Fly   422 RNATSKTIVSPE----GGWTTTSNITAVVEPNKRSLVVICHGLN------MQLTENV-VSTHTIN 475

  Fly   428 VRHRPGQAYIT--PNKPVVHVGNGVTLTCSANPPGWPVPQYRWF----------RDMDGEFSSTQ 480
            |.:.|....|:  ....::..|:...|.| .:..|.|:....|:          |..|...|:..
  Fly   476 VLYPPAPPLISGYMEGQIIPAGSVQKLLC-VSSGGNPLATLTWYKNDKRINSVIRAADKSVSAEI 539

  Fly   481 KILAQGPQYSIPKAHLGNEGKYHCHAVNE-LGIGMMATIVLEIHQPPQFLAKLQQHMTRRVADTD 544
            .|||....         |:.:|.|.|.|. ..|.:..:..|.:|..|: ..|::..........:
  Fly   540 TILANVSD---------NQAQYRCEASNSATEIPLFQSTTLSVHFAPE-TVKIRIEPEELRPGME 594

  Fly   545 YTVTC-SAKGKPAPSVKWLKDAVEILPEEN------------LYEVQTNPDQGLNGMV-TVQS-- 593
            .|:.| |:...|...:.|.||.:.|....|            ..|.:.|..|.:||.| |.||  
  Fly   595 ATIICDSSSSNPPAKLSWWKDGIPIEGINNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQSAN 659

  Fly   594 -------------------------------------QLKFRGKARP------------------ 603
                                                 |:..:.:|.|                  
  Fly   660 EALQRSAHEAVSLDVLYRPKFVPPPSSTAVGVEGESLQVSLQTRANPTPVTYKWTKDGTTIPQDG 724

  Fly   604 -----------NGNALVPGDRGLYTCLYQNEVNSANSSMQLRIEH--------EPIVLH------ 643
                       |...|...|.|:|:|...|....|..::.:.:|:        |.||::      
  Fly   725 DHRIFADGGSLNFTRLHRDDAGIYSCSASNSQGGATLNITVVVEYGTTIKSVSENIVVNPGEDAM 789

  Fly   644 ---------------QYNKVAFDIR---------------------------------------- 653
                           ::.:|.:|:.                                        
  Fly   790 LSCTVEGKPLTEEHVKWERVGYDMTVKTSTTFANGTSYLHIKDAKREDVGNFRCVADNRVDNPTN 854

  Fly   654 ---------------------------ETAEVVCKVQAYPKPEFQWQFGNNPSPLTMSSDGHYEI 691
                                       |...:.|:.|..|||:|.|:......|:..:.  .||:
  Fly   855 RDILLIVKFAPEIAKTPTLLRAASGTGERGRLPCRAQGSPKPQFIWRQDKKDLPINRTY--KYEV 917

  Fly   692 STTTDNNDIYTSVLKINSLTHSDYGEYTCRVANTLDTIRAPIRLQQKGPPEKPTNLRATEVGHNY 756
            .....::..|.|.|.::.:..:|||.|.|...|.|......:||:....|:.|.:|....|.|:.
  Fly   918 EERKIDSLTYESTLIVDKVAPADYGAYECVARNELGEAVETVRLEITSQPDPPLSLNILNVTHDT 982

  Fly   757 VSLSWDPGFDGGLSKTKFFVSYRRVAMPREEQLIPDCATLANSNSAWVEVDCQRDIPCKVT--AL 819
            |:|:|.||||||| |..:.|.||..  .||:....|  .|.||:              |:|  .|
  Fly   983 VTLAWTPGFDGGL-KASYRVRYRMA--DREQYKYID--GLPNSH--------------KLTIGGL 1028

  Fly   820 EQHQSYAFKVKALNPKSDSPYSSEIMVTTKVSRIPPPLQ-----------VTYEPNTRTLG---I 870
            ..:..|.|.|.:.|....|.|..: :...:....|||..           .:..|...|.|   :
  Fly  1029 RMNTLYLFSVMSWNELGQSSYLPD-LARAETKEAPPPSHPASSLGGGPPTTSQTPLGGTSGMLLV 1092

  Fly   871 DVGA-------------TCL---------------------------NLVAVVES-------MVN 888
            .|||             .||                           |||.:..|       :||
  Fly  1093 GVGAGIVVVLLNVFVIGCCLHKRNEKRLKRGLELMPAELTEDSSNTPNLVIIGISLAAFGFLLVN 1157

  Fly   889 ADSPMAAWEVV---------TTMDNLQLSGNGPTHKEKIIDRIIGARRVGGGRALGHTISEDEDD 944
            |.  :.||..|         ||        |.|. |...|:  :.|.........|.|:|...: 
  Fly  1158 AS--LVAWFFVHQRRKKVAETT--------NQPA-KTATIE--MYAPSSYNDTVTGETLSSVSE- 1208

  Fly   945 NGLNSLALEDENSPTVRVKLCLRTNPEHCGDYTDAEIGRPYIAEANALATP------TLIAIIVS 1003
               .|.:..:|.|          :.||:. |....:....|:.|.:.:..|      ||..|..:
  Fly  1209 ---KSESYSNEGS----------SQPEYI-DEVRKKAASTYLVEGSDMPPPRYQKDGTLPVIYPN 1259

  Fly  1004 CVVFALFAGLILMFCRCKRNQSKKSAAA----KDYEMDSVRPSIVAAQQNQAPPP---YYPASG- 1060
            .||.|         |.....:....:||    :|.:| .:...:.....:.||||   ||..:. 
  Fly  1260 NVVNA---------CTLPHPRHNNGSAAIHMTRDDQM-LISKGVYIPSPSPAPPPDGSYYNMNSD 1314

  Fly  1061 --LDNKALEHSMDLALSMEDQKTALYATQNGYSYHPGSGVVGVGMGGGVVGVGVGGSVVSGMGGG 1123
              |....:|:...|..:.:....|........|.....|...:|.|......|..|::..|:..|
  Fly  1315 RYLSYPPMEYPAALDFTAQPMPMAHLQPMTVTSLATNGGPTLIGNGSVAAVAGGSGTLRRGILRG 1379

  Fly  1124 VGGIGGSGV-----GVNGIP----------GLSAHTMPGNEWVN--------------MGYMENN 1159
            |.|:....|     .|.|.|          .|||.|:..:..:|              .|.:::.
  Fly  1380 VVGVPQPDVTHHTSTVGGSPMQMLHDLHPVNLSASTLTTSTTLNGSLPTATATLPRQPHGILKDP 1444

  Fly  1160 YSNSNNGGSVNSQDSLWQVK-----MSAAAVGNQQGM-VQAPMN--QYVEQQPAYG--------- 1207
            ..|.........|....|::     ::|:.||  .|: |.||:.  |.:...||.|         
  Fly  1445 NRNKQQQQQQQQQQQQQQLQHQQQLLNASLVG--VGVPVSAPLGSLQILNLPPASGGLGNNLLMT 1507

  Fly  1208 ---YDPLTHG--GYGAVDDYAPYP 1226
               :||.|.|  .:|||......|
  Fly  1508 TNAFDPTTVGLSSFGAVSQAGGIP 1531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
edNP_001260013.1 Ig 50..147 CDD:299845 23/99 (23%)
I-set 146..249 CDD:254352 30/109 (28%)
Ig 168..249 CDD:299845 24/84 (29%)
IGc2 268..323 CDD:197706 12/63 (19%)
Ig_3 341..406 CDD:290638 18/81 (22%)
Ig_2 437..514 CDD:290606 19/89 (21%)
I-set 526..633 CDD:254352 31/188 (16%)
Ig 546..632 CDD:143165 29/167 (17%)
IG_like 654..736 CDD:214653 22/81 (27%)
Ig 656..734 CDD:143165 20/77 (26%)
FN3 741..848 CDD:238020 34/108 (31%)
snsNP_001036532.1 I-set 73..170 CDD:254352 22/110 (20%)
Ig 76..155 CDD:299845 21/91 (23%)
IG_like 186..279 CDD:214653 25/93 (27%)
Ig 197..279 CDD:299845 24/82 (29%)
IG_like 296..376 CDD:214653 15/79 (19%)
Ig 300..361 CDD:299845 11/60 (18%)
Ig 380..454 CDD:299845 17/77 (22%)
IG_like 490..573 CDD:214653 19/92 (21%)
Ig 501..560 CDD:299845 16/68 (24%)
Ig 584..666 CDD:299845 18/81 (22%)
IG_like 585..666 CDD:214653 18/80 (23%)
I-set 678..767 CDD:254352 11/88 (13%)
IGc2 692..757 CDD:197706 10/64 (16%)
Ig 788..849 CDD:143165 2/60 (3%)
Ig 885..960 CDD:143165 20/76 (26%)
FN3 967..1051 CDD:238020 34/102 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451329
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11640
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.