DRSC/TRiP Functional Genomics Resources

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Protein Alignment ed and LOC103909460

DIOPT Version :9

Sequence 1:NP_001260013.1 Gene:ed / 33619 FlyBaseID:FBgn0000547 Length:1332 Species:Drosophila melanogaster
Sequence 2:XP_009293728.2 Gene:LOC103909460 / 103909460 -ID:- Length:286 Species:Danio rerio


Alignment Length:289 Identity:69/289 - (23%)
Similarity:117/289 - (40%) Gaps:65/289 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 ATEDKPMELTCSSIGGSPD---PTITWYR-----EGSNTPLPATVLKG-----------GTKDQP 208
            |.::..|.::|:.|..:|.   ..:.|.:     :|.|    .|.|..           |.|.|.
Zfish    19 ALQNSTMTISCTFIYPTPGFQIMKVFWNKDQEKYDGEN----FTDLSNYSEYSQRLQYLGDKQQN 79

  Fly   209 TNATLSIIPRREDDGAKYKC---VVRNRAMN-EGKRLEATATLNVNYYPRVEVGPENPLRVERDR 269
            ....||.:..:::....::.   |...:.:. .|.||..|           ::..|:|.||....
Zfish    80 CTVRLSHVTEKDEHDYYFRFTTNVTFGKVIGIPGVRLSVT-----------DLQLESPERVTEGD 133

  Fly   270 TAKLECNVDAK-PKVPNVRWNRNGRFISSSLVH-----TIHRVSVQDAGKYTCIADNGLGKTGE- 327
            :.:|.|..... ...|...|.||    |.:|.:     .|..||.::||:|:|      |..|: 
Zfish   134 SVRLTCRSSCNLTDTPTFIWYRN----SHTLTNIGDELNIRSVSRREAGRYSC------GVQGQT 188

  Fly   328 ---QELILDILY-PPMVVIESKTREAEEGDTVTIRCNVTANPAPVTIEWLKENSPDFRYNGDVLT 388
               ..:.|:|.| |...||.:::....|||:|.:.|:..||| |..|.|.|..:.  ..:|.:..
Zfish   189 YISPAVYLNITYAPDTPVISNRSAVIMEGDSVILNCSSNANP-PAEINWYKGKTS--LNSGRIFN 250

  Fly   389 LTSVRADHAGNYICRAVNIMQSQGMERSE 417
            ::.:.:|.:|.|.|||.|   ..|::.|:
Zfish   251 ISKISSDDSGEYKCRARN---EHGVKYSD 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
edNP_001260013.1 Ig 50..147 CDD:299845
I-set 146..249 CDD:254352 20/108 (19%)
Ig 168..249 CDD:299845 19/103 (18%)
IGc2 268..323 CDD:197706 15/60 (25%)
Ig_3 341..406 CDD:290638 21/64 (33%)
Ig_2 437..514 CDD:290606
I-set 526..633 CDD:254352
Ig 546..632 CDD:143165
IG_like 654..736 CDD:214653
Ig 656..734 CDD:143165
FN3 741..848 CDD:238020
LOC103909460XP_009293728.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D35531at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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