DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ed and LOC100536326

DIOPT Version :9

Sequence 1:NP_001260013.1 Gene:ed / 33619 FlyBaseID:FBgn0000547 Length:1332 Species:Drosophila melanogaster
Sequence 2:XP_021325377.1 Gene:LOC100536326 / 100536326 -ID:- Length:421 Species:Danio rerio


Alignment Length:464 Identity:98/464 - (21%)
Similarity:166/464 - (35%) Gaps:109/464 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 IVNSRSARRAATTICNFFLIALVAL-SSTTLADESIDTREN------ADLTLKCRFNDKYEANDF 69
            |:|||.          |.||.|:.: .|.||...|:..:|:      :.:||.|.::  |..|..
Zfish     7 IMNSRL----------FPLILLLHIPGSLTLQSLSVACKESVCAVKGSQVTLVCSYS--YRNNFK 59

  Fly    70 SFFW------TRWTAN----PAQFDNVAIGEVQLSSGYRLDFQPERGIYDLQIKNVSYNRDNGRF 124
            :.||      ..|..|    ....|:...|.|:.|..|...        .|.|.:|. .||:|.:
Zfish    60 TAFWFSQKQNINWRKNNEPEDLTLDSDYSGRVKSSISYYTS--------TLTISDVR-ERDSGEY 115

  Fly   125 ECRIKAKGTGADVHQEFHNLTVLTPPHPPVISPGNIAVATEDKPMELTCSSIGGSPDPTITWYRE 189
            :.....|.....:.....||||.........:|       .|:.:||.|.|...|.|.:..| :.
Zfish   116 QLMFIMKDGDKHLASVSINLTVTDLKMRMTTNP-------RDQTVELACDSYCSSKDWSYYW-KN 172

  Fly   190 GS---NTPLPATVLKGGTKDQPTNATLSIIPRREDDGAKYKCVVRN-------------RAMNEG 238
            |:   |:..|.|.:   ..::...:.|..:.:...:.:...||.::             ..:|..
Zfish   173 GNIKYNSFSPKTFV---VPNKNVYSHLCSVDQNIKNPSSSVCVSKSGCWDVSYTSTRICAVINST 234

  Fly   239 KRLEAT------ATLNVNYYPRVEVGPENPLRVERDRTAKLECNVDAKPKVPNVRWNRNGRFISS 297
            ..:..|      .|:|..::...:.|....|..|.....::|                   |:.:
Zfish   235 VDISCTYSHPSDYTINKTFWHYGQTGGFRDLCEEHQFAGRVE-------------------FVEN 280

  Fly   298 SLVHTIHRVSVQDAGKY--TCIADNGLGK-TGEQELILDILYPPMVVIESKTREAEEGDTVTIRC 359
            .|  .|.::.:.|:|:|  ..|.|...|| :|...:||.:....::   |:.....||:.|.:.|
Zfish   281 KL--RIKKLKISDSGEYRFRIITDKTEGKYSGSPGVILTVTDTQVI---SRPHTVSEGEKVILSC 340

  Fly   360 NVTANPA-PVTIEWLKEN---SPDF-RYNGDVLTLTSVRADHAGNYICRAVNIMQSQGMERSERV 419
            :.....: ..|..|.|..   :..| :||  .|.|.||..:....:.| ||..|..   |.:..:
Zfish   341 STKCTLSNKHTYIWYKNGRQVTDGFTKYN--KLYLDSVSNEELQEFSC-AVREMSP---EVNTAL 399

  Fly   420 GNSTVALLV 428
            .|:.:.|.|
Zfish   400 QNTLIVLFV 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
edNP_001260013.1 Ig 50..147 CDD:299845 25/112 (22%)
I-set 146..249 CDD:254352 20/124 (16%)
Ig 168..249 CDD:299845 17/102 (17%)
IGc2 268..323 CDD:197706 9/56 (16%)
Ig_3 341..406 CDD:290638 17/69 (25%)
Ig_2 437..514 CDD:290606
I-set 526..633 CDD:254352
Ig 546..632 CDD:143165
IG_like 654..736 CDD:214653
Ig 656..734 CDD:143165
FN3 741..848 CDD:238020
LOC100536326XP_021325377.1 IG_like 36..137 CDD:214653 24/111 (22%)
Ig 222..319 CDD:325142 21/117 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D35531at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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