DRSC/TRiP Functional Genomics Resources

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Protein Alignment fred and Mcam

DIOPT Version :10

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_075548.2 Gene:Mcam / 84004 MGIID:1933966 Length:648 Species:Mus musculus


Alignment Length:676 Identity:154/676 - (22%)
Similarity:243/676 - (35%) Gaps:177/676 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 FYWARWTCC----------------PTLFE----NVAI---GDVQLNSNY-RLDF---RPSRGIY 87
            |.:|...||                |.|.|    :.|:   |..:.:.|: ::|:   ...|.|.
Mouse    10 FLFAACCCCRRAAGVPGEEKQPVPTPDLVEAEVGSTALLKCGPSRASGNFSQVDWFLIHKERQIL 74

  Fly    88 DLQIKNTSYNRDNGRFECRIKAKGTGADV-------HQE---------------FYNLTVLTAPH 130
            ..::......|:.|.:|.|:..:.:.|.:       |.|               :..|.|..||.
Mouse    75 IFRVHQGKGQREPGEYEHRLSLQDSVATLALSHVTPHDERMFLCKSKRPRLQDHYVELQVFKAPE 139

  Fly   131 PPMVTPGNLAVATEEKPLE--LTCSSIGGSPDPMITWYR-------EGSTVPLQSYALKGGSKNH 186
            .|.:....:.:..:.:.|.  .||....|.|.|.:.||:       |.:.|.:||..:...|..:
Mouse   140 EPTIQANVVGIHVDRQELREVATCVGRNGYPIPQVLWYKNSLPLQEEENRVHIQSSQIVESSGLY 204

  Fly   187 YTNATLQIVPRRADDGAKYKCVVWNRAMPEG-HMLET-SVTLNVNYYPR----VEVGPQNPLKVE 245
            ...:.|.....:.|..|::.|.:..| :|.| ||.|: .||:.| :||.    |||.|...|| |
Mouse   205 TLKSVLSARLVKEDKDAQFYCELSYR-LPSGNHMKESKEVTVPV-FYPAEKVWVEVEPVGLLK-E 266

  Fly   246 RDHVAKLDCRVDAKPM--------------VSNVRWSRNGQYVSATPTHTIYRVNRHHAGKYTC- 295
            .|||. :.|..|..|.              :.......|| .:|..|      ..:||:|.|.| 
Mouse   267 GDHVT-IRCLTDGNPQPHFTINKKDPSTGEMEEESTDENG-LLSLEP------AEKHHSGLYQCQ 323

  Fly   296 SADNGLGKTGEKD-IVLDVLYPPIVFIESKTHEAEEGETVLIRCNVTANPSPINVEWLKEGAPDF 359
            |.|.....|...| :.|.|.|...|.:.....|.:|||::.:.|...:| ..:..|||::.....
Mouse   324 SLDLETTITLSSDPLELLVNYVSDVQVNPTAPEVQEGESLTLTCEAESN-QDLEFEWLRDKTGQL 387

  Fly   360 RYTGELLTLGSVRAEHAGNYICRSVNIMQPFSSKRVEGVGNS---TVALLVRHRPGQAYITPNKP 421
            ...|.:|.|.:||.|..|.|:|.:       |..||.|:..:   :|.:.     |..::...:.
Mouse   388 LGKGPVLQLNNVRREAGGRYLCMA-------SVPRVPGLNRTQLVSVGIF-----GSPWMALKER 440

  Fly   422 VVHVGNGVTLTCSANPPGWPVPQYRWFRDMDGD----------IGNTQKILAQGPQYSIPKAHLG 476
            .|.|.....|..|....|.|.|...|  :::|.          :.:|..:|.. |:.    ...|
Mouse   441 KVWVQENAVLNLSCEASGHPQPTISW--NVNGSATEWNPDPQTVVSTLNVLVT-PEL----LETG 498

  Fly   477 SEGKYHCHAVNELGIGKIATIILEVHQPPQFLAKLQQHMTRRVGDVDYAV--------TCSAKGK 533
            :|    |.|.|.|| ....||:|::    ..|..|....::..|.....|        |.:.|..
Mouse   499 AE----CTASNSLG-SNTTTIVLKL----VTLTTLIPDSSQTTGLSTLTVSPHTRANSTSTEKKL 554

  Fly   534 PTPQIRWI-----------------------KDGTEILPTRK--MFDIRTTPTDAGGGVVAVQS- 572
            |.|:.:.:                       |.|.  ||..:  ..:|...||.....||.|:| 
Mouse   555 PQPESKGVVIVAVIVCTLVLAVLGAALYFFYKKGK--LPCGRSGKQEITLPPTRKSEFVVEVKSD 617

  Fly   573 -----ILRFRGKARPNGNQLLPNDRG 593
                 :...:|.   ||::..|.|:|
Mouse   618 KLPEEMALLQGS---NGDKRAPGDQG 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 132..228 CDD:472250 26/106 (25%)
Ig strand B 148..152 CDD:409353 1/5 (20%)
Ig strand C 162..166 CDD:409353 0/3 (0%)
Ig strand E 190..194 CDD:409353 1/3 (33%)
Ig strand F 204..209 CDD:409353 1/4 (25%)
Ig strand G 221..224 CDD:409353 1/3 (33%)
Ig 238..313 CDD:472250 24/90 (27%)
Ig strand B 250..254 CDD:409353 0/3 (0%)
Ig strand C 264..268 CDD:409353 0/3 (0%)
Ig strand E 278..282 CDD:409353 1/3 (33%)
Ig strand F 292..297 CDD:409353 2/5 (40%)
Ig strand G 306..309 CDD:409353 1/3 (33%)
Ig_3 316..385 CDD:464046 19/68 (28%)
Ig_2 416..501 CDD:464026 22/94 (23%)
Ig 523..614 CDD:472250 22/110 (20%)
Ig strand B 524..528 CDD:409568 1/11 (9%)
Ig strand C 537..541 CDD:409568 0/3 (0%)
Ig strand E 566..570 CDD:409568 2/3 (67%)
Ig strand F 594..599 CDD:409568 154/676 (23%)
Ig strand G 607..610 CDD:409568
Ig_3 618..703 CDD:464046
FN3 720..838 CDD:238020
McamNP_075548.2 Ig 30..119 CDD:472250 16/88 (18%)
Ig strand B 46..50 CDD:409353 1/3 (33%)
Ig strand C 61..65 CDD:409353 1/3 (33%)
Ig strand E 101..105 CDD:409353 1/3 (33%)
Ig strand F 115..119 CDD:409353 0/3 (0%)
C2-set_2 141..236 CDD:400489 21/95 (22%)
Ig_3 264..323 CDD:464046 17/67 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 281..304 0/22 (0%)
Ig_3 348..412 CDD:464046 19/71 (27%)
Ig 440..517 CDD:472250 21/88 (24%)
Ig strand B 450..454 CDD:409353 1/3 (33%)
Ig strand C 463..467 CDD:409353 1/5 (20%)
Ig strand E 488..491 CDD:409353 1/2 (50%)
Ig strand F 499..503 CDD:409353 2/7 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 532..554 4/21 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 625..648 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.

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