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Protein Alignment fred and Alcam

DIOPT Version :10

Sequence 1:	NP_608812.3	Gene:	fred / 33613	FlyBaseID:	FBgn0051774	Length:	1447	Species:	Drosophila melanogaster
Sequence 2:	NP_113941.1	Gene:	Alcam / 79559	RGDID:	619972	Length:	583	Species:	Rattus norvegicus

Alignment Length:	443	Identity:	97/443 - (21%)
Similarity:	169/443 - (38%)	Gaps:	87/443 - (19%)

- Green bases have known domain annotations that are detailed below.

  Fly    87 YDLQIKNTSYNRDNGRFECRIKAKGTGADVHQEFYNLTVLTAPHPPMVTPGNLAVATEEKPLELT 151
            |.|.|.|...: |..||.|.:.   |..:|.:....:.|...|..|.:......:.||:......
  Rat    96 YTLSINNAKIS-DEKRFVCMLV---TEDNVFEAPTLVKVFKQPSKPEIVNRAAFLETEQLKKLGD 156

  Fly   152 CSSIGGSPDPMITWYREGSTVP--------LQSYALKGGSKNHYTNATLQIVPRRADDGAKYKCV 208
            |.|....||..|||||.|..:.        |....:..|::.:...::|:....::|....:.|.
  Rat   157 CISRDSYPDGNITWYRNGKVLQPVDGEVSILFKKEIDPGTQLYTMTSSLEYKTTKSDIQMPFTCS 221

  Fly   209 VWNRAMPEGH--MLETSVTLNVNYYPRVEV-----GPQNPLKVERDHVAKLDCRVDAKPMVSNVR 266
            |.... |.|.  :.......:: |||..:|     .|:|.:| |.|::. |.|..:..|......
  Rat   222 VTYYG-PSGQKTIYSEQAIFDI-YYPTEQVTIQVLPPKNAIK-EGDNIT-LQCLGNGNPPPEEFM 282

  Fly   267 WSRNGQY--VSATPTHTIYRVNRHHAGKYTCSADNGLGKTGEKDIV---LDVLYPPIVFIESKTH 326
            :...||.  :.::.|:|:..|.|:..|.|.||..:.........|.   ||:...|     |...
  Rat   283 FYLPGQAEGIRSSNTYTLTDVRRNATGDYKCSLIDQRNMAASTTITVHYLDLSLNP-----SGEV 342

  Fly   327 EAEEGETVLIRCNVTANPSPINVEWLKE-----GAPDFRYTGELLTLGSVRAEHAGNYICRSVNI 386
            ..:.|:|:.:.|.::|:.: ..|.|:|:     .:|.|         .|:..:.||||:|.:
  Rat   343 TKQIGDTLPVSCTISASRN-ATVVWMKDNIRLRSSPSF---------SSLHYQDAGNYVCET--- 394

  Fly   387 MQPFSSKRVEGV-GNSTVALLVRHRPGQAYITPNKPVVHVGNGVTLTCSANPPGWPVPQYRWFRD 450
                :.:.|||: ...::.|:|..:|.........|     :|::.|...:..|:|.|..:|...
  Rat   395 ----ALQEVEGLKKRESLTLIVEGKPQIKMTKKTDP-----SGLSKTIICHVEGFPKPAIQWTIT 450

  Fly   451 MDGDIGNTQKILAQGPQYSIPKAHLGSEGKYH--------------CHAVNEL 489
            ..|.:.|..:   :.|..:         |:|:              |.|.|:|
  Rat   451 GSGSVINQTE---ESPYIN---------GRYYSKIIISPEENVTLTCTAENQL 491

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.