DRSC/TRiP Functional Genomics Resources

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Protein Alignment fred and bcam

DIOPT Version :10

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_001352817.1 Gene:bcam / 767689 ZFINID:ZDB-GENE-060929-620 Length:611 Species:Danio rerio


Alignment Length:594 Identity:122/594 - (20%)
Similarity:207/594 - (34%) Gaps:151/594 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LLIIGQLWLSIGLISGDDSLDTREGVDLVLKCRFTEHYDSTDFTFYWARWTCCPTLFENVAIG-- 68
            |.::.|:.|:...:..:..:...:|..::|.|.:|...::.    ...:|      |...|.|  
Zfish    16 LAVVLQVCLASVTVKVNPEMHVLKGDTVMLPCTYTTSAEAA----VAVQW------FIEFADGGR 70

  Fly    69 -DVQLNSNYRLDFRPSRGIYDLQIKNTSYN------RDNGRFECRIKAKGTGADVHQEFYNLTVL 126
             .|...|:...|.......|.:: |:.|.|      .|:.:|.|::.|...|  ..:....:.|.
Zfish    71 KQVAYKSSVGSDAGTFTDRYTIE-KDMSLNISQVTVDDHKKFICQVTAGPVG--TAESATEVKVF 132

  Fly   127 TAPHPPMVTPGNLAVATE---EKPLEL-TCSSIGGSPDPMITWYREGSTVPLQS----------Y 177
            :||..|||.|....:..:   ....|: .|.|..|.|:|.|.|:::.:.:|.:.          :
Zfish   133 SAPEKPMVVPNPQKIFVDSSISSSAEVGKCISRNGHPEPRIIWFKDDNPLPEEKKKTEKTYMIHF 197

  Fly   178 ALKGGSKNHYTNATLQIVPRRADDGAKYKCVVWNRAMPEGHMLETSVTLNVNYYPRVEVGPQNPL 242
            .:|..|..:...:.|.:...:||..:.|.|:|             ..|:           |.|.:
Zfish   198 LVKEASGLYTLTSMLYMHLTKADAKSVYHCIV-------------EYTM-----------PDNQI 238

  Fly   243 KVERDHVAKLDCRVDAKPMVSNVRWSRNGQYVSATPTHTIYRVNRHHAGKYTCSADNGLGKTGEK 307
            |.|                 |:..::.:.||                      |.:|        
Zfish   239 KQE-----------------SSDNFNISLQY----------------------STEN-------- 256

  Fly   308 DIVLDVLYPPIVFIESKTH-EAEEGETVLIRCNVTANPSP----INVEWLKEGAPDFRYTGELLT 367
                       ||.:.|.. ..:||:.|:::|....||.|    ...|.|.||      .|..|.
Zfish   257 -----------VFFKVKNEGPIKEGDDVVMQCETDGNPQPQFDFFKGEKLLEG------LGGTLK 304

  Fly   368 LGSVRAEHAGNYICRSVNIMQPFSSKRVEGVGNSTVALLVRHRPGQAYITPNKP-VVHVGNGVTL 431
            ..|:..|.:|.|.|.::: .:..|..::....|..|..:      ...:.|..| ||..|:.|.|
Zfish   305 KKSITREDSGTYKCEAMD-YEADSKVQLHKTLNINVHYI------DITVEPEGPLVVSKGDHVEL 362

  Fly   432 TCSANPPGWPVPQYRWFRDMDGDIGNTQKILAQGPQYSIPKAHLGSEGKYHC-HAVNEL-GIGKI 494
            .|.|...  .....:|.:|        .|.|:....::.....|...|.|.| .||..: |:.|.
Zfish   363 QCKAKAS--EAHTLQWTKD--------SKELSNTGVFAKESVTLADGGVYVCVGAVPSVPGLQKQ 417

  Fly   495 ATIILEVHQPPQFLAKLQQHMTRRVGDVDYAVTCSAKGKPTPQIRWIKDGTEILPTRKMFDIRTT 559
            ..|.:.|...|:..|.::..:.:..|.|  .:.|||.|.|.||..|...|.|.:..:....|.|.
Zfish   418 VNITVNVKGQPEIDAPVKGLVDKEGGMV--TLNCSALGHPAPQFIWTPSGKESVTVKGNRVISTV 480

  Fly   560 PTDAGGGVV 568
            ..:|...|:
Zfish   481 TLEATAAVL 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 132..228 CDD:472250 22/109 (20%)
Ig strand B 148..152 CDD:409353 1/4 (25%)
Ig strand C 162..166 CDD:409353 1/3 (33%)
Ig strand E 190..194 CDD:409353 1/3 (33%)
Ig strand F 204..209 CDD:409353 2/4 (50%)
Ig strand G 221..224 CDD:409353 0/2 (0%)
Ig 238..313 CDD:472250 9/74 (12%)
Ig strand B 250..254 CDD:409353 0/3 (0%)
Ig strand C 264..268 CDD:409353 0/3 (0%)
Ig strand E 278..282 CDD:409353 0/3 (0%)
Ig strand F 292..297 CDD:409353 0/4 (0%)
Ig strand G 306..309 CDD:409353 0/2 (0%)
Ig_3 316..385 CDD:464046 21/73 (29%)
Ig_2 416..501 CDD:464026 22/87 (25%)
Ig 523..614 CDD:472250 14/46 (30%)
Ig strand B 524..528 CDD:409568 0/3 (0%)
Ig strand C 537..541 CDD:409568 1/3 (33%)
Ig strand E 566..570 CDD:409568 1/3 (33%)
Ig strand F 594..599 CDD:409568
Ig strand G 607..610 CDD:409568
Ig_3 618..703 CDD:464046
FN3 720..838 CDD:238020
bcamNP_001352817.1 Ig 27..131 CDD:472250 20/116 (17%)
Ig strand B 43..47 CDD:409353 1/3 (33%)
Ig strand C 59..62 CDD:409353 1/8 (13%)
Ig strand E 96..100 CDD:409353 1/3 (33%)
Ig strand F 110..115 CDD:409353 2/4 (50%)
Ig strand G 124..127 CDD:409353 0/2 (0%)
Ig 138..234 CDD:472250 22/119 (18%)
Ig strand C 172..176 CDD:409353 1/3 (33%)
Ig strand E 191..195 CDD:409353 0/3 (0%)
Ig_3 267..320 CDD:464046 18/58 (31%)
Ig_2 351..422 CDD:464026 21/80 (26%)
Ig_3 428..499 CDD:464046 18/64 (28%)
Blue background indicates that the domain is not in the aligned region.

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