DRSC/TRiP Functional Genomics Resources

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Protein Alignment fred and zgc:171470

DIOPT Version :9

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_001104655.1 Gene:zgc:171470 / 565848 ZFINID:ZDB-GENE-080204-4 Length:374 Species:Danio rerio


Alignment Length:308 Identity:74/308 - (24%)
Similarity:120/308 - (38%) Gaps:66/308 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 CRIK-AKGTGADVHQEFY-------------------NLTVLTAPHPPMVTPGNLAVATEEKPLE 149
            |.:| :..|..|.|..::                   ::|.|....|..||.|:        .:.
Zfish    95 CTVKLSLVTKKDEHMYYFRF
ITDQPGGKWAGYPGVRLSVTDLQLESPERVTEGD--------SVR 151

  Fly   150 LTC-SSIGGSPDPMITWYREGSTVPLQSYALKGGSKNHYTNATLQIVPRRADDGAKYKCVVWNRA 213
            ||| ||...:..|...|||....:..:|             :.|.:...|.:|..:|:|.|    
Zfish   152 LTCRSSCNLTDTPTFIWYRNSERMIERS-------------SELLLHSVRREDAGRYRCAV---- 199

  Fly   214 MPEGHMLET-SVTLNVNYYPR-VEVGPQNPLKVERDHVAKLDCRVDAKPMVSNVRWSRNGQYVSA 276
              .||.|.: .:.|||.|.|: |.|.......:.......|:|..|:.| .:.:.|.:....|.:
Zfish   200 --HGHTLTSPEIYLNV
MYPPKSVSVSISGSAVIVSGDSVTLNCSSDSNP-PAEISWFKGETSVGS 261

  Fly   277 TPTHTIYRVNRHHAGKYTCSADNGLGKTGEKDIVLDVLYPPIVFIESKTHEA--EEGETVLIRCN 339
            .....|.:::...:|:|.|.|.|.||:.....:.|||.|||:....|.:..|  ..|.:|.:.|:
Zfish   262 GRIFNISKISSGDSGEYKCRARNALGEKYSDPVTLDV
QYPPMNVSVSISGSAVIMSGHSVTLSCS 326

  Fly   340 VTANPSPINVEWLK-EGAPDFRYTGELLTLGSVRAEHAGNYICRSVNI 386
            ..:|| |..:.|.| |....|   |.:.::..:|        ||:.|:
Zfish   327 SDSNP-PAQISWFKGETLVGF---GRIFSISKIR--------CRARNV 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 29..126 CDD:299845 6/40 (15%)
IG_like 141..228 CDD:214653 20/88 (23%)
Ig 147..228 CDD:299845 20/82 (24%)
I-set 232..313 CDD:254352 18/81 (22%)
IGc2 250..302 CDD:197706 12/51 (24%)
IG_like 323..385 CDD:214653 16/64 (25%)
IGc2 330..385 CDD:197706 14/55 (25%)
Ig_2 416..501 CDD:290606
IG_like 418..501 CDD:214653
I-set 505..612 CDD:254352
Ig 526..611 CDD:143165
IG_like 633..715 CDD:214653
Ig 635..713 CDD:143165
FN3 720..838 CDD:238020
zgc:171470NP_001104655.1 Ig 25..114 CDD:299845 5/18 (28%)
IG_like 140..213 CDD:214653 24/99 (24%)
Ig_2 140..>197 CDD:290606 18/77 (23%)
Ig_2 224..298 CDD:290606 15/74 (20%)
IG_like 225..298 CDD:214653 15/73 (21%)
IG_like 310..373 CDD:214653 16/65 (25%)
Ig_2 314..373 CDD:290606 15/61 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D35531at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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