DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fred and side-III

DIOPT Version :9

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_001036681.1 Gene:side-III / 4379844 FlyBaseID:FBgn0083949 Length:1689 Species:Drosophila melanogaster


Alignment Length:1778 Identity:328/1778 - (18%)
Similarity:507/1778 - (28%) Gaps:686/1778 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LIIGQLWLSIGLISGDDSLD--TREGVDLV------LKCRFTEHYDSTDFTFYWARWTCCPTLFE 63
            |....:.|:.|.|..||..|  :...|:.|      |.|....  ::.|...|...|        
  Fly    33 LFAAHISLTSGQIDWDDDDDPVSTVAVEAVLGRTASLPCDIEP--EAKDDRVYMVLW-------- 87

  Fly    64 NVAIGDVQLNSNYRLDFRPSRG--IYDLQIKNTSYNR---------------------------- 98
                            ||.|.|  :|...::...:.:                            
  Fly    88 ----------------FRESAGKPLYSFDVRGRPFEKALYWSDTNSFGPRAYFVTGQQPAKLSVD 136

  Fly    99 -----DNGRFECRIKAKGTGADVHQEFYNLTVLTAPHPPMV-------TPGNLAVATEEKPLELT 151
                 |.|.:.||:..:.:....|:  .||||:..||..:|       ..|.:....|...:.||
  Fly   137 NIQLDDEGVYRCRVDFQNSPTRNHR--INLTVIVPPHQILVYDASGRDVAGAVGPLLEGDNIVLT 199

  Fly   152 CSSIGGSPDPMITW------YREGSTV-------------------------------------- 172
            |...||.|:|.:||      ...||.|                                      
  Fly   200 CEVRGGRPEPTVTWMNGTRTLEAGSGVSMGRHVTVNRLEVAQISRSALNNTYRCQASNTKLVAPV 264

  Fly   173 ----------------------------------------------------PLQSYALKGGSKN 185
                                                                |.:...|.....|
  Fly   265 ERSIRIEMLLKPTSVNLTNKLKVFASNTQYNLTCIVAGSVPDTEIKWTQNNRPFKRGLLSTSQSN 329

  Fly   186 HYTNATLQIVPRRADDGAKYKCVVWNRAMPEGHMLETSVTLNVNYYPRVEVGPQNPLK----VER 246
            ....:||...|:..|||...||...|..: :...:|.|:.:||.|.|:|.:...:.|:    .|.
  Fly   330 GRVISTLTFYPQPEDDGTMLKCEGSNPRL-QNSAIEDSLMMNVIYPPQVTLSLGSTLRPDDIKEG 393

  Fly   247 DHVAKLDCRVDAKPMVSNVRWSRNGQYVS---------ATPTHTIYRVNRHHAGKYTCSADNGLG 302
            |.| ..:|.:.:.|....:.||.:||.|:         :|.:..:.||.|.|:|.|.|||.|..|
  Fly   394 DDV-YFECHIKSNPKEHRIMWSHDGQPVTQNVSWGIIISTRSLVLQRVGRIHSGFYACSAANDRG 457

  Fly   303 KTGEKDIVLDVLYPPIVFIESKT-HEAEEGETVLIRCNVTANPSPINVEWLKEGAPDFRYTGE-- 364
            :|....:.|.:.|.|:....|.| ..|...|.|.|.|.|.::|..|:.||      .|..:||  
  Fly   458 ETQSAPVNLRIRYAPVCSSSSITVIGASLEEDVPIPCRVNSDPPEIDFEW------TFSTSGEHF 516

  Fly   365 --------------LLTLGSVR-------AEHAGNYICRSVNIMQPFSSKRVEGV----GNSTVA 404
                          :.|...||       ..|..:|:.....::.....:|..|.    |.:.:.
  Fly   517 EVPSGHYATIQDPTMTTTSDVRRTVVESNETHFESYVETVSELIYTPKGERDYGTLACYGRNAIG 581

  Fly   405 ---------LLVRHRPG-------QAYI-------TPNKPVVHVGNGVTLTCSANPPGWPVPQYR 446
                     ::...:||       :.|:       :.|:..:|....:......:...:|..:| 
  Fly   582 KQSDPCVFQVVPAAKPGALRNCTLRPYVVTSASLNSSNQTTMHANQILPTQYGRHESNYPHMEY- 645

  Fly   447 WFRDMDGDIGNTQKILAQGPQYSIPKAHLGSEGKYHCHAVNELGIGKIATIILEVHQ-------- 503
             .|:.....|......|       |.|...:....:.......|..|.....|...|        
  Fly   646 -VRERHNSSGGNNNGTA-------PAAGRNNVANKNMRGRTSAGQAKSNNKQLTQQQLQRLKKRT 702

  Fly   504 ---PPQFLAKLQQHMTRR--------VGDVDYAVTCSAKG---KP-----------------TPQ 537
               |.|.||.:::...|:        :....:..|.:..|   ||                 .||
  Fly   703 SFTPSQTLAAIERQRQRKQLSQQQQQLQQQHHQATATKSGGDNKPDGSPAKSSKQRMRRASRDPQ 767

  Fly   538 IR-----------WIKDGTEILPT-RKMFDIRTTPTDAGGGVVAVQSILRFRGKARPNGNQLLPN 590
            |:           .:...|.|..: ||..:...:.:..|.|   ..|..|.|..:..|.|.  .:
  Fly   768 IQQQQQHQQQQQHQLHAATSITSSQRKQAESNLSTSHLGKG---SSSSSRSRRSSSSNINS--KS 827

  Fly   591 DRGLYTCLYENDVNSANSSMHLR-------------IEHEPIVIHQYNKVAYDLRE--------- 633
            :.|.....|   .|....:||.:             .||...:||.|..::..||.         
  Fly   828 NNGKQPAKY---FNKRQKNMHKQKHQQKLKQLKGTTNEHNSNIIHHYAALSSSLRRRKRLAANDI 889

  Fly   634 ------------------------------SAEVVCRVQAYPKP--------------------- 647
                                          :.|:...|.|...|                     
  Fly   890 LATVAAASTSASLSSPPASSAASLAATATAAVEIEQDVSAVDAPAADSGSNNKRSRKSLTILDKQ 954

  Fly   648 ---EFQWQY-----------------GNN---------------------PSPLTMSSDGH---- 667
               :.|.|.                 |||                     ||....|:|..    
  Fly   955 KQQQEQQQLLPPNAPQISNQPVAAISGNNVKETAATSAHGAVAAGVKDKAPSSKEDSTDNDNDSD 1019

  Fly   668 ------------YEISTRMENNDVYTSILR--IAHLQHSDYGEYICRAVNPLDSIR-APIRLQPK 717
                        .||....|.||.......  .||...:|..|.:.:.....|.:. .|..||..
  Fly  1020 GDEDDDDDDDDGAEIDAETETNDEEEDEDEGGEAHDDDADLDEDVAQLATDADYLADGPGDLQEY 1084

  Fly   718 G---------------SPEKPTNLKIL----------EVGHNYAVLNWTPGFNGGFMSTKYL-VS 756
            .               |.|:..:|:.|          ||...|.|      .:..|:::..| .|
  Fly  1085 ETVEEVDGQAKHVHMLSLEEQLDLESLEDNVEEEDDGEVDDMYNV------SDDDFVASVALSTS 1143

  Fly   757 YRRVATP---------------REQTLSDCSGNGYIPSYQISS---SSSN--------------- 788
            ....|||               :.||.:|.:....:|.:..|.   |.||               
  Fly  1144 DTTAATPLQRTTEGPHIREKATQSQTQTDSATEWQLPHFDYSRMEYSFSNGVVTQSLLGGGAVTG 1208

  Fly   789 SNHE-------------------WIEFNCFKENPCKLAPLDQH---QSYMFKVYALNSKGTSGYS 831
            :.|:                   .:|..|.   |.....|.|.   ::|..|...|....:|.|.
  Fly  1209 AGHDGFAGGGTINFDNYDNIIYSTMELECM---PGYDGGLQQQFFLEAYDSKTMKLRLNMSSTYM 1270

  Fly   832 NEILATTKVSKIPPPLHVSYDPNSHVLGINVAATCLSLIAVVESLVTRDATVPMWEIVET----- 891
            :..:....:|.:.|   :.|.|::|.          :|..||.|:..:..:.|:  ::|.     
  Fly  1271 DVPVFRIDLSDLMP---MDYYPDAHP----------ALHLVVYSVNQKGRSEPI--VLENVPINE 1320

  Fly   892 ----------LTLLP-----SGSETTFKEAIINHVSRPAHYTTATTSGRSLGVGG-----GSHLG 936
                      |::||     :|:..|...|:::.|      ..|....|..|...     ..|||
  Fly  1321 ADKRSDGRMGLSILPLAALLAGTLFTVGIAVLSVV------VIAVRRRRGQGARNMCDDKDKHLG 1379

  Fly   937 EDRTMALAETAGPGPVVRVKLCLRSNHEHCGAYANAEIGKSYMPH----KSSMTTSALVAIIIAS 997
            .|.|:......|.|            |:........:.|....|.    :.|..|....:..:.:
  Fly  1380 MDVTVTAPLETGAG------------HQRLVVAYTLKQGIEKQPDILSAQKSAPTGGDASSPLGN 1432

  Fly   998 LSFVVFLGLLYAFCHCRRKHAAKKESSSVGGGVGGGNAN-ATANP--GSTGA-KEYDLDLDASRR 1058
            ....:|.|                  ...|||.|||.|. |:|.|  |:||. |..|.|.:|   
  Fly  1433 RPSGLFAG------------------GGGGGGGGGGAAGLASAAPMTGNTGGHKTTDYDGNA--- 1476

  Fly  1059 PSLSQDPQQSQQQPPPPPPYYPTGTLDSKDIGNGNGGMELTLTALHDPDEQLNMQQQQHHSNHGQ 1123
            |.|:..|.||........|....|.|    :|..:||....|  |:|....|:           :
  Fly  1477 PHLNSPPSQSSTLKLESDPAAGGGGL----VGARSGGSNPPL--LYDAMPTLS-----------R 1524

  Fly  1124 YQQPKAILGIYGGVAGSGGNNS---------------------GG-----QH--PHS-------- 1152
            |:|....:..|...||:||::|                     ||     .|  ||:        
  Fly  1525 YEQLGLSMASYSAGAGTGGSSSTLSSAGSTVSNAMAANGSAGPGGYAAHLHHTLPHNMAPQRGHD 1589

  Fly  1153 --NGYGYHVTSAI---GVDSD--SYQVLPSVANSAAGSHGHGSGHGHGLGAGESGPLEATPPTCN 1210
              |...|..||::   |::..  ::..||.......|. |.|.|.|.|:|.| .||.........
  Fly  1590 PLNLADYLTTSSLIDYGLNKPPAAHMTLPKGMGLGLGM-GLGVGVGAGMGVG-PGPGMGMGMAST 1652

  Fly  1211 ISGGSSSNSGINPMQQQHSARAN 1233
            ::|.|.|.|.:|.:..:.:|..|
  Fly  1653 MAGTSLSPSQLNTITHKSAAGRN 1675

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 29..126 CDD:299845 20/137 (15%)
IG_like 141..228 CDD:214653 27/182 (15%)
Ig 147..228 CDD:299845 26/176 (15%)
I-set 232..313 CDD:254352 27/93 (29%)
IGc2 250..302 CDD:197706 18/60 (30%)
IG_like 323..385 CDD:214653 20/85 (24%)
IGc2 330..385 CDD:197706 17/77 (22%)
Ig_2 416..501 CDD:290606 12/91 (13%)
IG_like 418..501 CDD:214653 12/82 (15%)
I-set 505..612 CDD:254352 26/146 (18%)
Ig 526..611 CDD:143165 21/116 (18%)
IG_like 633..715 CDD:214653 24/201 (12%)
Ig 635..713 CDD:143165 24/158 (15%)
FN3 720..838 CDD:238020 32/183 (17%)
side-IIINP_001036681.1 IG_like 59..166 CDD:214653 19/134 (14%)
V-set 59..166 CDD:284989 19/134 (14%)
ig 190..268 CDD:278476 13/77 (17%)
IG_like 192..259 CDD:214653 13/66 (20%)
Ig 296..361 CDD:299845 12/65 (18%)
IG_like 391..468 CDD:214653 24/77 (31%)
IGc2 392..454 CDD:197706 20/62 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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