DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fred and side

DIOPT Version :10

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_001247334.1 Gene:side / 43300 FlyBaseID:FBgn0016061 Length:986 Species:Drosophila melanogaster


Alignment Length:1239 Identity:230/1239 - (18%)
Similarity:373/1239 - (30%) Gaps:496/1239 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 TFYWARWTCCPTLFENVAIGDVQLNSNYRLDFRPSRGIYDLQIKNTSYNRDNGR----------- 102
            |.||.|.|         .....:.|:|.:.:....|       |:.:...|||:           
  Fly    24 TTYWPRQT---------GNSKSKSNTNCKCNINTHR-------KSRTRCPDNGKTIWAVGFTLVL 72

  Fly   103 FECRIKAKGTGADVHQEFYNLTVLTAPHPPMVTPGNLAVATEEKPLELTCS-SIGGSPD--PMIT 164
            ..|..:.|...||...:.:...:          |..|..|...|.:||.|. :...|.|  .::.
  Fly    73 LTCLQQLKSVSADEESQDFQKNI----------PARLVWAALGKTVELPCDLTPPTSQDSVKLLL 127

  Fly   165 WYREGSTVPLQSYALKGGS---------------------KNHYTNATLQIVPRRADDGAKYKCV 208
            |:::.:.:||.|...:||:                     .::..::.|||...:.:||..|:|.
  Fly   128 WFKDTTGIPLYSLDSRGGNVKLAPHAAIASDLGQRLFFSIGDNPKDSRLQINDVKPEDGGVYRCR 192

  Fly   209 V--WNRAMPEGHMLETSVTLNVNYYPRVEVGPQNP--LKVERDHVAK------------LDCRVD 257
            |  :|           |.|.|..:...:.|.|:.|  ...:...:::            |.|:|.
  Fly   193 VDFFN-----------SPTRNFRHNLTLVVPPEEPRIFDAQGKEISQMAGPFREGYELFLCCQVR 246

  Fly   258 AKPMVSNVRWSRN--------------------GQYVSATPTHTIYRVNRHHAGKYTCSAD-NGL 301
            .......|.|.|:                    .|.:..|.|...|.:      :..|.|. ..|
  Fly   247 GGRPPPKVTWWRDDTELIGTSHTSVEEGATVMVNQLLIGTTTRDFYGI------RIECRAQGTRL 305

  Fly   302 GKTGEKDIVLDVLYPPI-VFIESKTHEAEEGETVLIRCNVTANPSPINVEWLKEGAP-------- 357
            .....||:.:.|...|: |.|.:.......|:.:.|||....:.....:.||.:|.|        
  Fly   306 VDPVRKDVTVQVYLKPVRVKIATPNELLTAGQPMPIRCESWGSYPAAKITWLLDGEPIRNAEVTV 370

  Fly   358 -----DFRYTGELLTLGSVRAEHAGNYICRSVNIMQPFSS------KRVEGVG-NSTVALLVRHR 410
                 |...|..:|||............||:.|   |:.|      ||:..|. ..||::.:.:.
  Fly   371 HSDKEDGNITTSILTLKVTSENDNAELTCRATN---PWFSGGAIEDKRIIRVAYPPTVSVHLANE 432

  Fly   411 PGQAYITPNKPVVHVGNGVTLTCSANP-PGWPVPQYRWFRDMDGDIGNTQKILAQGPQYSIPKAH 474
            .....:|..:     |..||..|.|:. |  ||..|.||::.....|.:.:|:      .:.:..
  Fly   433 DPSRLVTRAE-----GQNVTFKCRADARP--PVTSYSWFKNGMRMSGESTEIM------HLTQLE 484

  Fly   475 LGSEGKYHCHAVNELGIGKIATIILEVHQPPQFLAKLQQHMTRRVGDVDYAVTCSAKGKPTPQIR 539
            ..|.|.|.|.|.|..|..:.:::.|:|...|:                     |           
  Fly   485 RESAGAYACGATNTEGETRSSSLTLKVQFSPR---------------------C----------- 517

  Fly   540 WIKDGTEILPTRKMFDIRTTPTDAGGGVVAVQSILRFRGKARPNGNQLLPNDRGLYTCLYENDVN 604
              |.|||               ....|.|::.|||                              
  Fly   518 --KSGTE---------------QTSIGAVSLHSIL------------------------------ 535

  Fly   605 SANSSMHLRIEHEPIVIHQYNKVAYDLRESAEVVCRVQAYPKPE---FQWQYGN--NPSPLTMSS 664
                                            |.|.|.|.| |:   |.|.|.|  |.||:    
  Fly   536 --------------------------------VKCEVDADP-PDSVRFSWTYNNTRNVSPV---- 563

  Fly   665 DGHYEISTRMENNDVYTSILRIAHLQHSDYGEYI---CRAVNPLDSIRAP--IRLQPKGSPEKP- 723
                 :::|:::|.:.::   :.:|..:| .|.|   |.|.|.:.....|  :.:.|..:||.| 
  Fly   564 -----LNSRIQSNGLAST---VTYLPQTD-SELITLACWASNAVGRQTTPCLVHILPANTPEAPK 619

  Fly   724 ----TNLKILEV----GHN--------YAVLNWTPGFNG----------GFMSTKYLVSYRRVAT 762
                .|..:|||    |.:        ..|:...|.::|          |..|....:....::|
  Fly   620 ACELRNDTVLEVVCVAGSDGGLSQYFMLEVVGGDPLYSGDPGGSAGQGRGQFSEAIGLGDNEIST 684

  Fly   763 PREQTLSDCSGNGYIPSYQISSSSSNSNHEWIEFNCFKENPCKLAPLDQHQSYMFKVYALNSKGT 827
            ..:|..|       .|.:::..:|.       :|        :|..|:..:.|.|.|||:|:||.
  Fly   685 LNDQATS-------APIFRMQENSP-------QF--------RLNNLEPGREYQFLVYAVNAKGR 727

  Fly   828 SGYSNEILATTKVSKIPPPLHVSYDPNSHVLGINVAATCLSLIAVVESLVTRDATVPMWEIVETL 892
            |               .||:.:.        .:.|||   .|....||:::.|            
  Fly   728 S---------------EPPVVIE--------NVRVAA---QLGPYDESILSED------------ 754

  Fly   893 TLLPSGSETTFKEAIINHVSRPAHYTTATTSGRSLGVGGGSHLGEDRTMALAETAGPGPVVRVKL 957
               |:.:|||             |:...       ||||.   |....:....:.|.||..:..|
  Fly   755 ---PTPAETT-------------HHGGG-------GVGGS---GSSSGLGTGASTGSGPEKQSTL 793

  Fly   958 CLRSNHEHCGAYANAEIGKSYMPHKSSMTTSALVAIIIASLSFVVFLGLLYAFCHCRRKHAAKKE 1022
                                       :..:|:|.|....::.::..|::..   ||.:      
  Fly   794 ---------------------------LILAAVVVIGAVVVTSIIVAGIVVV---CRHR------ 822

  Fly  1023 SSSVGGGVGGGNANATANPGSTGAKEYDLDLDASRRPSLSQDPQQSQQQPPP-----PPPYYPTG 1082
                                              .||   .:||:.::...|     |..|....
  Fly   823 ----------------------------------PRP---PEPQEVRKSMRPARNDVPSMYIEED 850

  Fly  1083 TLDSKDIGNGNGGMELTLTALHDPDEQLNMQQQQHHSNHGQYQQPKAILGIYGGVAGSGGNNSGG 1147
            .|:..:.|   ||....:.|...|       ...|....|....|       |||..|||...|.
  Fly   851 ELNELEEG---GGRAADIRARVAP-------PNSHLCGGGGMPMP-------GGVGSSGGAIVGV 898

  Fly  1148 QHPH 1151
            ..||
  Fly   899 AGPH 902

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 132..228 CDD:472250 26/121 (21%)
Ig strand B 148..152 CDD:409353 2/3 (67%)
Ig strand C 162..166 CDD:409353 0/3 (0%)
Ig strand E 190..194 CDD:409353 1/3 (33%)
Ig strand F 204..209 CDD:409353 2/4 (50%)
Ig strand G 221..224 CDD:409353 0/2 (0%)
Ig 238..313 CDD:472250 17/109 (16%)
Ig strand B 250..254 CDD:409353 1/15 (7%)
Ig strand C 264..268 CDD:409353 1/3 (33%)
Ig strand E 278..282 CDD:409353 1/3 (33%)
Ig strand F 292..297 CDD:409353 1/4 (25%)
Ig strand G 306..309 CDD:409353 1/2 (50%)
Ig_3 316..385 CDD:464046 18/82 (22%)
Ig_2 416..501 CDD:464026 22/85 (26%)
Ig 523..614 CDD:472250 10/90 (11%)
Ig strand B 524..528 CDD:409568 0/3 (0%)
Ig strand C 537..541 CDD:409568 0/3 (0%)
Ig strand E 566..570 CDD:409568 2/3 (67%)
Ig strand F 594..599 CDD:409568 0/4 (0%)
Ig strand G 607..610 CDD:409568 0/2 (0%)
Ig_3 618..703 CDD:464046 21/92 (23%)
FN3 720..838 CDD:238020 30/144 (21%)
sideNP_001247334.1 V-set 95..211 CDD:462230 27/136 (20%)
Ig 211..301 CDD:472250 14/95 (15%)
Ig strand B 239..243 CDD:409353 1/3 (33%)
Ig strand C 253..257 CDD:409353 1/3 (33%)
Ig strand E 281..285 CDD:409353 1/3 (33%)
Ig strand F 295..300 CDD:409353 1/4 (25%)
Ig 326..408 CDD:472250 18/84 (21%)
Ig strand B 339..343 CDD:409353 1/3 (33%)
Ig strand C 353..357 CDD:409353 0/3 (0%)
Ig strand E 384..388 CDD:409353 3/3 (100%)
Ig strand F 396..401 CDD:409353 1/4 (25%)
Ig_2 442..511 CDD:464026 21/81 (26%)
FN3 <700..735 CDD:238020 15/64 (23%)

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