DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fred and plum

DIOPT Version :9

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_001163744.1 Gene:plum / 43197 FlyBaseID:FBgn0039431 Length:1298 Species:Drosophila melanogaster


Alignment Length:1500 Identity:252/1500 - (16%)
Similarity:434/1500 - (28%) Gaps:563/1500 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 HQEFYNLTVLTAPHPPMVTPGNLAVATEEKPLELTCSSIGGSPDPMITWYREGSTVPLQSYALKG 181
            |..:|      .|..|::||.|    .::....:.||           |||....|...||    
  Fly    71 HSPYY------LPCIPILTPYN----HDQDNQPIYCS-----------WYRNDVVVEQVSY---- 110

  Fly   182 GSKNH---YTNATLQIVPRRADDGAKYKCVVWNRAMPEGHMLETSVTLNVNYYPRVEVGPQNPLK 243
             .||.   |.|.||::.......|..|..:.|:    |..::...:|:......|:..|.|....
  Fly   111 -RKNDFFIYDNGTLRLPTNEKASGEYYCKIEWD----ESAVISDRITVEYPVLKRLFPGQQQAAN 170

  Fly   244 VERDHVAKLDCRVDAKPMV----------SNVRW--------SRNGQYVSATPTHTIYRVNRHHA 290
            :.         .::.||:|          :...|        :.|...:....|..:..:....|
  Fly   171 IS---------ALENKPLVLSCPFLSVPAARFSWYFGNDSLTNDNSALILTNGTLILRHLRLEQA 226

  Fly   291 GKYTCSADNGLGKTGEKDIVLDV--------LYP--PIVFIESKTHEAE-------------EGE 332
            |||.|.|.|.......:..:..:        .||  .....|:...||:             .|.
  Fly   227 GKYKCVAQNTFASKTHRQFIWQLQVEPKDATFYPKNEAGITETAVSEAQLLPAFQNATVFVPAGG 291

  Fly   333 TVLIRCNVTANPSPINVEWLKEGAPDFRYTGELLTLGSVRAEHAGNYICRSVNIMQPFSSKRVEG 397
            :||::|:..|:..||                                    |..:||.::|.|. 
  Fly   292 SVLLQCHAVADFVPI------------------------------------VWYLQPPNNKMVR- 319

  Fly   398 VGNSTVALLVRHRPGQAYITPNKPVVHVGNGVTLTCSANPPGWPVPQYRWFRDMDGDIGNTQKIL 462
            :.|::||                                                          
  Fly   320 LSNNSVA---------------------------------------------------------- 326

  Fly   463 AQGPQYSIPKAHLG-SEGKYHCHAVNELGIGKIATIILEVHQPPQFLAKLQQHMTRRVGDVDYAV 526
                 |||..|.:. .||:|.|  :..|.......|   |..||:.:::|...:. .:| :...:
  Fly   327 -----YSITNASIARHEGRYSC--ITPLETQNFQVI---VTTPPRIVSRLPVEVV-YIG-LSRTL 379

  Fly   527 TCSAKGKPTPQIRWIKDGTEILPTRKMFDIRTTPTDAGGGVVAVQSILRFRGKARPNGNQLLPND 591
            ||.|:|.|.|.|.|..:|..:..:...:        ..|..:.|.|   |..|           :
  Fly   380 TCRAEGHPEPSITWYHNGVHLNSSYTRY--------ISGNELHVHS---FDSK-----------E 422

  Fly   592 RGLYTCLYENDVNSANSSMHLRIEHE-------------PIVIHQYNKVAYDLR--ESAEVVCRV 641
            .|:|.|:..|.....:::..||...:             |...|..| :.:|.|  .|..||..|
  Fly   423 EGIYQCVARNVAGEDSATGELRFNRQLEEVNPLQNIRCYPHSFHSIN-ITFDSRTLTSMFVVYIV 486

  Fly   642 QAYPKPEFQWQYGNNP------SPLTMSSDGHYEISTRMENNDVYTSILRIAHLQHSDYGEYICR 700
            :            |||      ||:.::...:..|||.:...:.:..|.|:..    ...|....
  Fly   487 R------------NNPHSWTSFSPMKLNQTSYVVISTDLPVYEPFALITRVLF----PTTEVRTG 535

  Fly   701 AVNPLDSIRAPIRLQPKGSPEKPTNLKILEVGHNYAVLNWTPGFNGGFMSTKYLVSYRRV--ATP 763
            .:.|...|.:.:|..|.....:...|:.:.|| |...:.|:   .|...:.||.:....:  ..|
  Fly   536 TLVPQQMILSSLRSTPVTCCTQGLMLRPIAVG-NDTFVKWS---QGQLENKKYFILQFSINHTHP 596

  Fly   764 REQTLSDCSGNGYIPSYQISSSSSNSNHEWIEFNCFKENPCKLAPLDQHQSYMFKVYALNSKGTS 828
            ....|.:.|..|.:.|.:..:                         ||.:.::.::..||....:
  Fly   597 HPAQLLNGSLQGTLTSVEEKA-------------------------DQVRHHLTEIQPLNQSAAA 636

  Fly   829 GYSNEILATTKVSKIPPPLHVSYDPNSHVLGINVAATCLS----------LIAVVESLVTRDATV 883
            .....:.....|  :...|.:..|..|.|:..:|....|.          :|......:.:|...
  Fly   637 TVLRNVEHEDNV--VDDTLELEDDIFSLVVDASVTGILLQRFTRIKMRVLIITTENEFLGQDFRY 699

  Fly   884 PMWEIVETLT---------------------LLPSGSETTFKEAIINHVSRPAHYTTATTSGRSL 927
            ..|:|:|..|                     .|.|.:||...|.   |....|..:..:...:. 
  Fly   700 VQWKIIENGTSEQSNMPFRLVTRESRALAFKFLDSLNETCVLEC---HTEIQAQMSLPSQDPKC- 760

  Fly   928 GVGGGSHLGEDRTMA---------------------------------LAETAGPGPVVRVKL-- 957
                     :||.:|                                 ..|...||.:...||  
  Fly   761 ---------QDRNIANSLLLVTGLKPDTRYNLHFYNCKTRIFYGDIDEKTEQDPPGTISNSKLIK 816

  Fly   958 --------------------------------------CLRSNHEHCGAYANAEI---------- 974
                                                  |.:.:::.......|:|          
  Fly   817 QNGLKLMWEPPINPNGRVHHYDIRWSLDNVTHEAIVKECTKCSYKFPNVSETAKIHVAVRVMGDT 881

  Fly   975 -------------GKSYMPHKSSMTTSALVAII----IASLSFVVFLGLLYAFCHCRRKHAAKKE 1022
                         ..:::..:|..:.|.:.:.|    :.|::.|...||...|  .:|...|:.:
  Fly   882 GAGAPMYFDMINNNHTWLKEESESSHSEVYSGIAIGSLLSIACVFLFGLFIIF--QQRNFKARAQ 944

  Fly  1023 ----------------SSSVG------GGVGGGNANATANPGST--GAKEYDLDLDASRRPSLSQ 1063
                            ||:.|      ||:.||......:...|  ....|.::|    .|..|.
  Fly   945 GPTHLTTPTDINFGNLSSASGMPGDSAGGLSGGTLQQDCHEMQTLIPRSRYHIEL----LPEHSL 1005

  Fly  1064 DPQQSQQQPPPPPPYYPTGTLDSKDIGNGNGGMELTLTALHDPDEQLNMQQQQHHSNHGQYQQPK 1128
            :.|.|            |..:....:.||||.:::...:..|                |..|...
  Fly  1006 EYQTS------------TAAVAVVHLANGNGSVQVARRSDQD----------------GAAQGDL 1042

  Fly  1129 AILGIYG-------GVAGSGGNNSGGQH-----------PHSNGYGYHVTSAIGVDSDSYQVLPS 1175
            .|.|::.       ||.|:.......|.           |    |.:...:|:.:.|.....:||
  Fly  1043 GIAGVHNLSQLPLCGVGGTSPERKTVQDAMLQEAKAFYIP----YRHTPPNAVALSSSKQCAVPS 1103

  Fly  1176 VANSAAGSHGHGSGHGHGLGAGESGPLEATPPTCN-ISGGSSSNSGINPMQQQHSARANLTNQPT 1239
            .:....            :....|.||..|.|... :.||.|...|:....::..:.:      :
  Fly  1104 GSELEV------------IVPPNSLPLVTTMPGLGVVGGGGSGGGGVGGSSRRSGSLS------S 1150

  Fly  1240 IATASSTNNYNNHLNNTNIAHTTNNTNNCTTLKRGHLGNRERERERCQVTAATAATTTALATTIT 1304
            .:.:||:|..:....:||....:|:.:....|         .|.|              .|.|:|
  Fly  1151 SSASSSSNGSSKKQFHTNFVRHSNSNDGIYLL---------AEEE--------------AAATLT 1192

  Fly  1305 TTSRNAKAATTTTT-------LAITGSSSNSNENNYSNARDLSQEALWRLQMATAQSQQIYVERP 1362
            .||....||...|.       :|.:|..:.:..||.:::.:.||::      |||:.:|......
  Fly  1193 PTSEREYAAVCLTNGFKLPADVAKSGGGTYNTTNNNNSSTNTSQKS------ATAKERQPRGNGN 1251

  Fly  1363 PSAFS 1367
            |.:||
  Fly  1252 PISFS 1256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 29..126 CDD:299845 2/8 (25%)
IG_like 141..228 CDD:214653 19/89 (21%)
Ig 147..228 CDD:299845 19/83 (23%)
I-set 232..313 CDD:254352 16/98 (16%)
IGc2 250..302 CDD:197706 13/69 (19%)
IG_like 323..385 CDD:214653 9/74 (12%)
IGc2 330..385 CDD:197706 7/54 (13%)
Ig_2 416..501 CDD:290606 10/85 (12%)
IG_like 418..501 CDD:214653 10/83 (12%)
I-set 505..612 CDD:254352 21/106 (20%)
Ig 526..611 CDD:143165 18/84 (21%)
IG_like 633..715 CDD:214653 18/87 (21%)
Ig 635..713 CDD:143165 16/83 (19%)
FN3 720..838 CDD:238020 17/119 (14%)
plumNP_001163744.1 IG_like 170..241 CDD:214653 13/79 (16%)
IGc2 175..235 CDD:197706 12/59 (20%)
IG_like 284..356 CDD:214653 25/176 (14%)
I-set 360..443 CDD:254352 21/106 (20%)
IGc2 378..435 CDD:197706 18/78 (23%)
FN3 804..886 CDD:238020 7/81 (9%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11640
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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