DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fred and side-IV

DIOPT Version :9

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_001034052.2 Gene:side-IV / 41657 FlyBaseID:FBgn0038156 Length:1001 Species:Drosophila melanogaster


Alignment Length:1261 Identity:242/1261 - (19%)
Similarity:385/1261 - (30%) Gaps:459/1261 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 TAPHP------------PMVTPGNLA------VATEE------KPLELTCSSIGG---------- 157
            |||||            |::....::      |..:|      :|:.||  ::.|          
  Fly    31 TAPHPFPSPNVWRQLLLPLLMLSGISQVCSTYVEQDELMQNLDRPVPLT--TVQGVLGRQAMLPC 93

  Fly   158 --SPDP------MITWYREGSTVPLQSYALKG---------------GSKNHYTNAT----LQIV 195
              ||..      |:.|:|||...|:.::.::|               |::.|:::.|    |:|.
  Fly    94 DISPQERDDAVYMVLWFREGDGEPIYNFDVRGRQFGQARLWSSPTAFGTRAHFSSTTHPAQLKID 158

  Fly   196 PRRADDGAKYKCVVWNRAMPEGHMLETSVTLNVNYYPRVEVGPQNPLKVERDHVAK--------- 251
            ..|.:|...|:|.|..|..|         |.|:.....|.|.|..|:...::...|         
  Fly   159 NIRIEDEGVYRCRVDFRNSP---------TRNLKINLTVIVPPDRPVIYGQNRHEKAGNVESFSE 214

  Fly   252 -----LDCRVDAKPMVSNVRWSRNGQYV---------SATPTHTIY-RVNRHHA-GKYTCSADN- 299
                 |.|.|.......||.|..:...:         ..|..|..| .|.|.|. .:..|.|.| 
  Fly   215 GNDIVLSCEVSGGRPRPNVTWYLDNTAIDESFEQRPDGKTINHLSYPNVGRQHLNSRLMCVASNT 279

  Fly   300 GLGKTGEKDIVLDVLYPPI-VFIESKTHEAEEGETVLIRCNVTANPSPINVEWLKEGAPDFRYTG 363
            .|.....:.::|||...|| |.|.:|........|..:.|..:.:..|..:.|.|          
  Fly   280 NLTPPNNRVVILDVNLKPIAVHILTKDRFVSADRTYDVECKSSGSKPPALITWWK---------- 334

  Fly   364 ELLTLGSVRAEHAGNYICRSVNIMQPFSSKRVEGVGNSTVALLVRHRPGQAYITPNKPVVHVGNG 428
                 ||.:.:..      :.|..:|         .|.::::|.        .||.:.    .:|
  Fly   335 -----GSKQLKKL------TKNFNEP---------DNQSLSILT--------FTPGRE----DDG 367

  Fly   429 VTLTCSANPPGWPVPQYRWFRDMDGDIGNTQKILAQGPQYSIPKAHLGSEGKYHCHAVNELGIGK 493
            ..|||.|.      .|:     :||.                     ..|.|:.           
  Fly   368 KYLTCRAE------NQF-----IDGS---------------------AIEDKWR----------- 389

  Fly   494 IATIILEVHQPPQFLAKLQQHMTR---RVGDVDYAVTCSAKGKPTP-QIRWIKDGTEILPTRKMF 554
                 |.||..|....|:...:..   :.|| |....|.....|.| ::.|..:|.|:       
  Fly   390 -----LIVHYQPTTTLKIGSSLNPDDIKEGD-DAYFECIVLANPKPYKMSWFHNGKEL------- 441

  Fly   555 DIRTTPTDAGGGVVAVQSILRFRGKARPNGNQLLPNDRGLYTCLYENDVNSANSS-MHLRIEHEP 618
                 ..:...||:.....|..:..:|.:.        |.||||..|......|: :.|||.:.|
  Fly   442 -----QHNISAGVILSDQSLVLQSVSRASA--------GDYTCLAVNSEGKGPSNPVTLRIRYAP 493

  Fly   619 IVIHQYNKVAYDLR-ESAEVVCRVQAYPKPE-FQWQYGNNPSPLTMSSDGHYEISTRMENNDVYT 681
            |....:.::...|: |:..:.|.|.:.|..: |||.:.        ||....|:..|:.:::...
  Fly   494 ICATDHEELLGALKHETLPLKCEVDSSPPADSFQWTFN--------SSGEQTELPARLHSSETGM 550

  Fly   682 SILRIAHLQHSDYGEYICRAVNPLDSIRAP--IRLQPKGSPEKPTNLKILEVGHNYAVLNWTPGF 744
            |.|........|||...|.|.|.:.:.::|  .::...|.|....|..:.....:...::...||
  Fly   551 SRLNYTPSTDLDYGTISCWAKNSIGTQKSPCVFQIVAAGRPFPLQNCSVTNQSVDSLQVDCLEGF 615

  Fly   745 NG----GFMSTKYLVSYRRVATPREQTLSDCSGNGYIPSYQISSSSSNSNHEWIEFNCFKENPCK 805
            :|    |||..  ||....:...|..|:|                     |..:.|        .
  Fly   616 DGGLPQGFMLE--LVELNTLRLARNITVS---------------------HTPVTF--------V 649

  Fly   806 LAPLDQHQSYMFKVYALNSKGTS-----------GYSNEILATTKVSKIPPPLHVSYDPNSHVLG 859
            :..|||..:|...::|:|:||.|           |.:....|:|.:|.   ||.......:...|
  Fly   650 IDNLDQAATYRMVIFAVNAKGRSEPTIIDDINFKGVAKFTGASTGLSM---PLSPFLAGLTLFCG 711

  Fly   860 INVAATCLSLIAVVESLVTRDATVPMWEIVETLTLLPSGSETTFKEAIINHVSRPAHYTTATTSG 924
            :..|..|:.|.|:...:..|.:...:.....|...:|:..:..           |.|....|.  
  Fly   712 LLFAIFCIMLAAIYRRISNRRSDSNLKVAKHTQLTIPADCQLD-----------PLHPGVQTD-- 763

  Fly   925 RSLGVGGGSHLGEDRTMALAETAGPGPVVRVKLCLRSNHEHCGAYANAEIGKSYMPHKSSMTTSA 989
                 |.|:|......:.|.             |...|...|||.  .::|              
  Fly   764 -----GSGNHQPHHSLLPLN-------------CDGRNAVDCGAL--GDVG-------------- 794

  Fly   990 LVAIIIASLSFVVFLGLLYAFCHCRRKHAAKKESSSVGGGVG----GGNANAT-----ANPGSTG 1045
                                                 |||||    ||...::     |.||.| 
  Fly   795 -------------------------------------GGGVGVGLDGGIKGSSPIGLVAMPGDT- 821

  Fly  1046 AKEYDLDLDASRRPSLSQD------------PQQSQQQP-----PPPPPYYPTGTLDSKDIGNGN 1093
                 |..:|..|.|...|            |.|.:::|     .||....|:..|..:|.    
  Fly   822 -----LRSNARNRHSPMADQADIDDTDPDVIPNQYEKRPLKSLVSPPGFASPSNRLMQRDY---- 877

  Fly  1094 GGMELTLTALHDPDEQLNMQQQQHHSNHGQYQQPKAILGIYGGVAGSG-GNNSGGQHPHSNGYGY 1157
                |..|.|......:.|                   |...|::..| .::||.:..|   |.:
  Fly   878 ----LRETELTKGGSDVGM-------------------GAAEGLSSIGLMSSSGNEVLH---YTF 916

  Fly  1158 HVTSAIGVDSDSYQVLPSVANSAAGSHGHGSGHGHGLGAGESGPLEATPPTCNISGGSSSNSGIN 1222
            ..:..|     ||..|                       .:.|....:||..:::...|:::   
  Fly   917 RPSKQI-----SYATL-----------------------NKKGITTCSPPLGSLNYSVSTST--- 950

  Fly  1223 PMQQQHSARANLTNQPTIATASSTNN 1248
            |....|     ||.||...:..|.||
  Fly   951 PTSSYH-----LTPQPMEVSLLSPNN 971

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 29..126 CDD:299845
IG_like 141..228 CDD:214653 28/129 (22%)
Ig 147..228 CDD:299845 26/117 (22%)
I-set 232..313 CDD:254352 22/106 (21%)
IGc2 250..302 CDD:197706 16/77 (21%)
IG_like 323..385 CDD:214653 8/61 (13%)
IGc2 330..385 CDD:197706 7/54 (13%)
Ig_2 416..501 CDD:290606 13/84 (15%)
IG_like 418..501 CDD:214653 12/82 (15%)
I-set 505..612 CDD:254352 22/111 (20%)
Ig 526..611 CDD:143165 17/86 (20%)
IG_like 633..715 CDD:214653 20/84 (24%)
Ig 635..713 CDD:143165 19/80 (24%)
FN3 720..838 CDD:238020 26/132 (20%)
side-IVNP_001034052.2 V-set 79..188 CDD:284989 25/119 (21%)
IG_like 80..188 CDD:214653 24/116 (21%)
Ig 210..281 CDD:299845 15/70 (21%)
Ig 319..392 CDD:299845 23/162 (14%)
IG_like 319..383 CDD:214653 20/137 (15%)
IG_like 412..489 CDD:214653 21/97 (22%)
IGc2 413..478 CDD:197706 19/85 (22%)
Ig_3 509..572 CDD:290638 18/70 (26%)
fn3 593..675 CDD:278470 23/112 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.