DRSC/TRiP Functional Genomics Resources

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Protein Alignment fred and side-VII

DIOPT Version :10

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_649933.1 Gene:side-VII / 41184 FlyBaseID:FBgn0037736 Length:939 Species:Drosophila melanogaster


Alignment Length:1322 Identity:236/1322 - (17%)
Similarity:378/1322 - (28%) Gaps:563/1322 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SLDTREGVDLVLKCRFTEHYDSTDFTFYWARWTCCPTLFENVAIGDVQLNSNYRLDFRPSRGIYD 88
            |:|.|.||....|                 ||:      ::...||   .:.:..|..|.:    
  Fly    66 SIDIRAGVSKAPK-----------------RWS------DDSVFGD---RAYFIFDKEPGK---- 100

  Fly    89 LQIKNTSYNRDNGRFECRI---KAKGTGADVHQEFYNLTVLTAPHPPMV-TPGNLAVATEEKP-- 147
            |.|:||..: |:|.:.||:   ||:...:.:     .|.|::.|...:: ...|:..:|...|  
  Fly   101 LSIQNTQAS-DSGTYRCRVDFLKAQTINSRI-----RLNVISPPKQVIIRDSSNVERSTVVGPYS 159

  Fly   148 ----LELTCSSIGGSPDPMITWYREGSTVPLQSYALKGGSKNHYTNATLQIVPRRADDGAKYKCV 208
                :.|.|..|||.|.|.|:|||:|..:|.:...|.|| |......||..:.|. |..::..| 
  Fly   160 EGDIVSLKCQVIGGYPTPTISWYRDGIEIPCELSHLAGG-KIIECEITLPSLGRE-DLNSRLTC- 221

  Fly   209 VWNRAM--PEGHMLETSVTLNVNYYP---RVEVGPQNPLKVERDHVAKLDCRVDAKPMVSNVRWS 268
               ||:  |...::|..|.:::|:.|   |: :|...||...|.:  .|.|:.......:.:.|.
  Fly   222 ---RALSHPRAPIVEAVVQIDMNFAPLNIRL-LGAHQPLSAGRRY--DLLCQSAGSRPPAVITWW 280

  Fly   269 RNGQYVSAT----------PTHTI-YRVNRHHAGKY-TCSADNGL--GKTGEKDIVLDVLYPPIV 319
            :||..:..|          .|.|: ..:::..|||| :|.|.|..  .:..|....||:.|.|..
  Fly   281 QNGIRLEKTTETTSSDGNQTTSTLSISLSKSDAGKYLSCKAYNHAVPSEPLEDGWKLDIQYVPEA 345

  Fly   320 FIESKT----HEAEEGETVLIRCNVTANPSPINVEWLKEGAPDFRYTGELLTLGSVRAEHAGNYI 380
            ::...|    ....||..|...|.|.|:|:...:||.....|    ....::||.:.:.|     
  Fly   346 YVRLGTSLDPSTLREGTDVYFDCLVMAHPNVFRIEWRHNEQP----LSHNISLGVIISNH----- 401

  Fly   381 CRSVNIMQPFSSKRVEGVGNSTVALLVRHRPGQAYITPNKPVVHVGNGVTLTCSANPPGWPVPQY 445
                       |..::||..:|.                                          
  Fly   402 -----------SLVLQGVTRATA------------------------------------------ 413

  Fly   446 RWFRDMDGDIGNTQKILAQGPQYSIPKAHLGSEGKYHCHAVNELGIGKIATIILEVHQPPQFLAK 510
                                             |.|.|...|..|.|..|...|           
  Fly   414 ---------------------------------GNYSCVGFNAEGEGISAPFAL----------- 434

  Fly   511 LQQHMTRRVGDVDYAVTCSAKGKPTPQIRWIKDGTEILPTRKMFDIRTTPTDAGGGVVAVQSILR 575
                      ::.||.||:...|                  |::.|..                 
  Fly   435 ----------NILYAPTCAQNQK------------------KVYGIAK----------------- 454

  Fly   576 FRGKARPNGNQLLPNDRGLYTCLYENDVNSANSSMHLRIEHEPIVIHQYNKVAYDLRESAEVVCR 640
                                                                    :|.|:|:|.
  Fly   455 --------------------------------------------------------QEDAKVMCT 463

  Fly   641 VQAYPKP-EFQWQYGNNPSPLTMSSDGHYEISTRMENNDVYTSILRIAHLQHSDYGEYICRAVNP 704
            |.|.|:. ||.|.:.|:...:.::::......|        |||:....:...|||..:|.|.|.
  Fly   464 VDANPREVEFSWTFNNSAESIDVATNHIIRSGT--------TSIVTYTPITELDYGTLLCLASNK 520

  Fly   705 LDSIRAP--IRLQPKGSPEKPTNLKILEVGHNYAVLNWTPGFNGGF---MSTKYLVSYRRVATPR 764
            :...|.|  ..:...|.|||..|..:..:......:..:.|||||.   .:.:.|.||.:     
  Fly   521 IGKQRVPCVFHIIAAGRPEKVHNCTVNNISMTSLTVTCSDGFNGGLPQSFNLELLDSYTQ----- 580

  Fly   765 EQTLSDCSGN--GYIPSYQISSSSSNSNHEWIEFNCFKENPCKLAPLDQHQSYMFKVYALNSKGT 827
                 :...|  ..||.:.:...|..|                        .|...:||.|:||.
  Fly   581 -----EIKANITSTIPKFTVPGLSPGS------------------------IYRLNIYAFNTKGR 616

  Fly   828 SGYSNEILATTKVSKIPPPLHVSYDPNSHVLGINVAATCLSLIAVVESLVTRDATVPMWEIVETL 892
            |                       ||                 |:|.:.:.|             
  Fly   617 S-----------------------DP-----------------AIVNAAMLR------------- 628

  Fly   893 TLLPSGSETTFKEAIINHVSRPAHYTTATTSGRSLGVGGGSHLGEDRTMALAETAGPGPVVRVKL 957
              :|.                                   ..|..::|..|.......||:    
  Fly   629 --MPE-----------------------------------KQLTSEQTHNLRAELLFSPVM---- 652

  Fly   958 CLRSNHEHCGAYANAEIGKSYMPHKSSMTTSALVAIIIASLSFVVFLGLLYAFCHCRRKHAAKKE 1022
                                      |:|....:|:::|.|:.::.|.:.......||:.....|
  Fly   653 --------------------------SLTIGLTLAVLVAVLAIILALRIPCTASSRRRQKELSNE 691

  Fly  1023 SSSVGGGVGGGNANATANPG----STGAKEYDLDLDASRRPSLSQDPQQSQQQPPPPPPYYPTGT 1083
                       |.:...:||    |:|:||.| |.| .:.|.:..:..:..:|...........|
  Fly   692 -----------NISRDESPGPSDKSSGSKEVD-DCD-EKNPDVVPESIEPDEQAESIRKRQQIST 743

  Fly  1084 LDSKDIGNGNGGMELTLTALHDPDEQLNMQQQQHHSNHGQYQQPKAILGIYGGVAGSGGNNSGGQ 1148
            :|:.                ..|:..:.:.:|||.:        .|.:.:              :
  Fly   744 IDTN----------------RSPNRGIFVNEQQHLT--------AAEISL--------------R 770

  Fly  1149 HPHSNGY-----GYHVTSAIGVDSDSYQVLPSV-ANSAAGSHGHGSGHGHGLGAGESGPLEATPP 1207
            ..|..||     |.|..:...|...|..|.|.| :||.:                     :.|.|
  Fly   771 ASHGIGYCTLRSGMHAQAQSSVGEISINVTPHVYSNSIS---------------------QCTLP 814

  Fly  1208 -----------TCNISG--------------GSSSNSGINPMQQQHSARANLTNQPTIATASSTN 1247
                       .|||:|              |..:..|.||.|..|....:.:.....:.|||||
  Fly   815 RQSSQNVWNNYNCNITGARPTSTFHQLTFPQGRVNVGGHNPAQPLHGHAPSPSQASNSSMASSTN 879

  Fly  1248 NY-NNHLNNTNIAHTTNNTNNC 1268
            .. ..|.:...||....|...|
  Fly   880 TLPQPHPHGRTIAMHHMNQAQC 901

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 132..228 CDD:472250 30/104 (29%)
Ig strand B 148..152 CDD:409353 1/3 (33%)
Ig strand C 162..166 CDD:409353 1/3 (33%)
Ig strand E 190..194 CDD:409353 2/3 (67%)
Ig strand F 204..209 CDD:409353 1/4 (25%)
Ig strand G 221..224 CDD:409353 1/2 (50%)
Ig 238..313 CDD:472250 20/88 (23%)
Ig strand B 250..254 CDD:409353 1/3 (33%)
Ig strand C 264..268 CDD:409353 0/3 (0%)
Ig strand E 278..282 CDD:409353 1/3 (33%)
Ig strand F 292..297 CDD:409353 3/5 (60%)
Ig strand G 306..309 CDD:409353 1/2 (50%)
Ig_3 316..385 CDD:464046 15/72 (21%)
Ig_2 416..501 CDD:464026 8/84 (10%)
Ig 523..614 CDD:472250 7/90 (8%)
Ig strand B 524..528 CDD:409568 2/3 (67%)
Ig strand C 537..541 CDD:409568 0/3 (0%)
Ig strand E 566..570 CDD:409568 0/3 (0%)
Ig strand F 594..599 CDD:409568 0/4 (0%)
Ig strand G 607..610 CDD:409568 0/2 (0%)
Ig_3 618..703 CDD:464046 20/85 (24%)
FN3 720..838 CDD:238020 24/122 (20%)
side-VIINP_649933.1 V-set 32..134 CDD:462230 23/103 (22%)
Ig_3 160..223 CDD:464046 22/68 (32%)
Ig 256..328 CDD:472250 17/73 (23%)
Ig strand B 262..266 CDD:409353 1/5 (20%)
Ig strand C 276..280 CDD:409353 0/3 (0%)
Ig strand E 302..306 CDD:409353 1/3 (33%)
Ig strand F 316..321 CDD:409353 2/4 (50%)
Ig 351..426 CDD:472250 22/169 (13%)
Ig strand B 364..368 CDD:409353 1/3 (33%)
Ig strand C 375..382 CDD:409353 1/6 (17%)
Ig strand E 401..405 CDD:409353 2/19 (11%)
Ig strand F 415..420 CDD:409353 2/4 (50%)
Ig_3 <456..519 CDD:464046 20/70 (29%)
FN3 538..620 CDD:238020 26/155 (17%)

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