DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fred and side-V

DIOPT Version :9

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_611765.2 Gene:side-V / 37679 FlyBaseID:FBgn0085400 Length:1174 Species:Drosophila melanogaster


Alignment Length:1377 Identity:259/1377 - (18%)
Similarity:427/1377 - (31%) Gaps:483/1377 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 LQIKNTSYNRDNGRFECRIKAKGTGADVHQE-----FYNLTVLTAP--------HPPMVTPGNLA 140
            |:|||.. ..|.|.::||:       |.|:.     ..|:|||..|        |...:......
  Fly   119 LRIKNIQ-TSDAGLYKCRV-------DFHKSPTRNWRINVTVLVPPTALTILDHHGAEIRDQTAG 175

  Fly   141 VATEEKPLELTCSSIGGSPDPMITWYREGSTVPLQSYALKGGSKNHYTNATLQIVPRRADDGAKY 205
            ...|...::|||.|.||.|.|.::|:||.:.:                           ||..  
  Fly   176 PYLEGDSIDLTCLSSGGVPPPRVSWWREHALI---------------------------DDSF-- 211

  Fly   206 KCVVWNRAMPEGHMLETSVTLNVNYYPRVEVGPQNPLKVERDHVAKLDCRVDAKPMVSNVRWSRN 270
                  :.:|:|.:                   :|.|:::         .:..|.:::       
  Fly   212 ------QVLPDGSV-------------------RNVLRLK---------NIQRKDLLT------- 235

  Fly   271 GQYVSATPTHTIYRVNRHHAGKYTCSADNG-LGKTGEKDIVLDVLYPPI-VFIESKTHEAEEGET 333
                                 .|||.|.|| :.....|.::||:..||: :.::...|....|..
  Fly   236 ---------------------MYTCQASNGHVVPALTKKVILDMNLPPLSLLLQGLNHAVIAGTR 279

  Fly   334 VLIRCNVTANPSPINVEWLKEGAPDFRYTGELLTLGSVRAEHAGNYICRSVNIMQPFSSKRVEGV 398
            ..:.|.......|..:.|.|.|                       .|.|.       ::......
  Fly   280 SHVTCTAIGARPPPEIIWSKAG-----------------------QIVRG-------ATSSTSSD 314

  Fly   399 GNSTVALLVRHRPGQAYITPNKPVVHVGNGVTLTCSANPPGWPVPQYRWFRDMDGDIGNTQKILA 463
            ||:|::.|:        :.|    |...|...:.||                :..:.|.|.:.|.
  Fly   315 GNTTISELM--------LIP----VPEDNERQVVCS----------------ISLNAGITSQQLH 351

  Fly   464 QGPQYSIPKAHLGSEGKYHCHAVNELGIG------KIATIILEVHQP-----------PQFLAKL 511
            :|                |...:..||.|      |.:.::...|.|           |..|.| 
  Fly   352 EG----------------HTTVMTTLGNGHTGLYLKDSRVLNVTHAPIVNLNLGAPLDPDNLLK- 399

  Fly   512 QQHMTRRVGDVDYAVTCSAKGKPT-PQIRWIKDGTEILPTRKMFDIRTTPTDAGGGVVAVQSILR 575
                     ..|..:.|..|..|. .::.|.....::..:|              |::.....|.
  Fly   400 ---------GTDVYLECDVKANPAITRVEWYHSDKQLHSSR--------------GIIISNQTLV 441

  Fly   576 FRGKARPNGNQLLPNDRGLYTCLYENDVNSANSS-MHLRIEHEPIVIHQYNKVAYDLRESAEVVC 639
            .:|.::        :..|.|.|...|...|.:|: ::|.:::.|:...:...:...|:::..:.|
  Fly   442 LQGISK--------SSHGQYFCRASNLQGSVSSNEVYLDVKYPPVCKSESTIIRAALKQTINITC 498

  Fly   640 RVQAYP--KPEFQWQYGNN--------------PSPLTMSSD--GHYEISTRMENNDVYTSIL-- 684
            .|.|.|  ...::|.:.|:              |..|...||  |:|:.|.|..::.:...:|  
  Fly   499 EVDANPVDNLNYKWHFNNSLESLIELPQLGQGAPVMLASGSDQSGYYQRSKRKHSHGMQQRLLHG 563

  Fly   685 ---RIAHLQHSD-----YGEY----------ICRAV-------NPLDSIRAPIRLQPKGSPEKPT 724
               |:|.::..|     |||:          ..:.|       |.::|.:...|.|.  ||::..
  Fly   564 RHGRMAAVRFEDEDEDGYGEFEEYGDEVGQPFTQMVYSNMVHKNHVESSKQQQRKQL--SPQQQQ 626

  Fly   725 NLKILEVGHNYAVLNWTPGFNGGFMSTKYLVSYRR------VATPREQTLSDCSGNGYIPSYQIS 783
            ..:.:..|.:... :.||. .|..:..|.||:..:      ||||...|.:....|.|  ||.:.
  Fly   627 QQQQMASGGSSGD-SHTPS-GGVILERKRLVALHKQHHRGGVATPPTTTAAPPLNNVY--SYHVE 687

  Fly   784 S----------SSSNSNHE---WIEFNCFKENPCKL-APLDQHQSYMFKVYALNSKGTSGYSNEI 834
            |          :||...|.   |     :...|..| .|:....:|.....:|..:...||.   
  Fly   688 SYESFGAISCVASSPMGHSAPCW-----YHIQPADLPEPVKNCTAYNATANSLQIQCIPGYD--- 744

  Fly   835 LATTKVSKIPPPLHVS-YDP-NSHVLGINVAATCLSLIAVVESLVTRDATVPMWEIVETLTLLPS 897
                  ..||...|.. ||. |..:|                    .:|:....|.  |:..|||
  Fly   745 ------GGIPQHFHAQIYDELNRQIL--------------------YNASYKYSEF--TVKRLPS 781

  Fly   898 GSETTFKEAIINHVSRPAHYTTATTSGRSLGVGGGSHLGEDRTMALAETAGPGPVVRVKLCLRSN 962
            .|....:...:|  ::.|........||:|.                     .|::|        
  Fly   782 DSVFVIRITAVN--AQGASKVAYRLRGRTLS---------------------APLLR-------- 815

  Fly   963 HEHCGAYANAEIGKSYMPHKSSMTTSALVAI--IIASLSFVVFLGLLYAFCHCRRKHAAKKESSS 1025
                                ::.:|:.||.:  ::.:|..|:...:|.|.|..    ...|..|.
  Fly   816 --------------------TASSTAVLVQLTPLLGALVGVIATLILVAICVV----IVIKFRSK 856

  Fly  1026 VGGGVGGGNANATANPGSTGAKE------------YDLDLDASRRPSLSQD-------------- 1064
            .||...|..|:||......|:.|            .|.:.|...:.:.|:|              
  Fly   857 RGGRRHGSGADATTTEADKGSAEPLSRNMGSHSSLEDKNPDVVPQEANSEDEFHQEEKAFDRLNM 921

  Fly  1065 ---------PQQSQQQPPPPPPYYPTGTLDSKDIGNGNGGMELTLTALHDPDEQL-NMQQQQHHS 1119
                     |.:.....||||...||       .|...|  ||:||.  :|...| |..|:....
  Fly   922 ESQRILYTPPTRINTASPPPPSLSPT-------FGKQYG--ELSLTT--NPAFSLYNTPQRAPAV 975

  Fly  1120 NHGQYQQPKAIL------GIYGGVAGSGGNNSGGQHPHSNGYGYHV---------TSAIGVDSDS 1169
            ....|..|..:|      .||..:.|.||...|.....:...|||:         ||..|  |.:
  Fly   976 QRPVYTAPPPLLSTRTPPNIYTRIPGRGGGGGGATVTAAGAGGYHLPAYETRTSPTSPYG--STT 1038

  Fly  1170 YQVLPSVANSAAGSHGHGSGHGHG--LGAGESGPLEATPPTCNISGGSSS-NSGINPMQQQHSAR 1231
            ...:|.:...:.||...|...|.|  :|.|....| ..|.:.::.|.|:: .|.:........|.
  Fly  1039 TCTMPLLGGQSNGSLQSGGVGGVGGLVGGGACNTL-PHPGSLHVGGISAALTSSVTSGNITIGAA 1102

  Fly  1232 ANLTNQPTIATASSTNNYNNHLNNTNIAHTTNNTNNCTTLKRGHLGNRERERERCQVT---AATA 1293
            .:|...|    .|.|..|:..|.............|..|:.. .|.   :|..:||:.   .::.
  Fly  1103 QSLLTSP----RSQTATYSTTLGGVQSPLLMGGGGNYETVSSXELA---KEDIKCQIVCIGGSST 1160

  Fly  1294 ATTTALATTITT 1305
            .||:.|....||
  Fly  1161 CTTSTLGAERTT 1172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 29..126 CDD:299845 12/41 (29%)
IG_like 141..228 CDD:214653 16/86 (19%)
Ig 147..228 CDD:299845 15/80 (19%)
I-set 232..313 CDD:254352 11/81 (14%)
IGc2 250..302 CDD:197706 7/52 (13%)
IG_like 323..385 CDD:214653 9/61 (15%)
IGc2 330..385 CDD:197706 8/54 (15%)
Ig_2 416..501 CDD:290606 14/90 (16%)
IG_like 418..501 CDD:214653 14/88 (16%)
I-set 505..612 CDD:254352 18/108 (17%)
Ig 526..611 CDD:143165 14/86 (16%)
IG_like 633..715 CDD:214653 25/126 (20%)
Ig 635..713 CDD:143165 24/122 (20%)
FN3 720..838 CDD:238020 29/137 (21%)
side-VNP_611765.2 Ig 42..153 CDD:299845 12/41 (29%)
IG_like 42..152 CDD:214653 11/40 (28%)
IGc2 179..245 CDD:197706 24/156 (15%)
IG_like 179..245 CDD:214653 24/156 (15%)
Ig <282..348 CDD:299845 18/123 (15%)
IGc2 400..459 CDD:197706 12/80 (15%)
FN3 719..798 CDD:214495 20/111 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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