DRSC/TRiP Functional Genomics Resources

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Protein Alignment fred and side-VIII

DIOPT Version :10

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_001097382.2 Gene:side-VIII / 37310 FlyBaseID:FBgn0086604 Length:1201 Species:Drosophila melanogaster


Alignment Length:1531 Identity:302/1531 - (19%)
Similarity:460/1531 - (30%) Gaps:587/1531 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LWLSIGLISGDDSLDTREGVDLVLKCRFTEHYDSTDFTFYWARWTCCPTLFENVAIGDVQLNSNY 76
            :|..:||.:...|:|||:.       .|.:....:|.|:                        ..
  Fly    87 IWYKVGLKTPIYSVDTRDS-------NFAQGTHWSDETY------------------------RE 120

  Fly    77 RLDFRPSRGIYDLQIKNTSYNRDNGRFECRI---KAKGTGADVHQEFYNLTVLTAPHPPMVTPG- 137
            ||.|........|.||:|:.: |.|.:.||:   |:....:.|     ||||:..|...::... 
  Fly   121 RLSFHVEGRAGTLTIKSTTED-DTGEYRCRVDFQKSPTRNSKV-----NLTVIIPPESVIILDSK 179

  Fly   138 -------NLAVATEEKPLELTCSSIGGSPDPMITWYREGSTVPLQSYALKGGSKNHYTNATLQIV 195
                   .|....|...:.:||.:|||.|.|.:||. .|:||              |.||:    
  Fly   180 GVTIEDHTLGPYNEGSGINITCVAIGGRPQPRVTWL-HGNTV--------------YKNAS---- 225

  Fly   196 PRRADDGAKYKCVVWNRAMPEGHMLETSVTLNVNYYPRVEVGPQNPLKVERDHVAKLDCRVDAKP 260
                                                    ||  .||...|              
  Fly   226 ----------------------------------------VG--QPLSERR-------------- 234

  Fly   261 MVSNVRWSRNGQYVSATPTHTIYRVNRHHAG-KYTCSAD-NGLGKTGEKDIVLDV-LYPPIVFIE 322
             |.|              |.::.|:.|.:.. :.||.|: |.|.......:|||: |.|.||.::
  Fly   235 -VGN--------------TLSLARLERRNLHMQLTCRAENNNLTTPIISSVVLDMNLRPLIVKLQ 284

  Fly   323 SKTHEAEEGETVLIRCNVT-ANPSPINVEWLKEGAPDFRYTGELLTLGSVRAEHAGNYICRSVNI 386
            .:......|.:..:.|.|. |.|:| .:.|.| |:...:.|.|:.|..                 
  Fly   285 GENRALSAGNSYQLSCVVIGARPAP-TITWWK-GSTPMKNTHEIATPD----------------- 330

  Fly   387 MQPFSSKRVEGVGNSTVALLVRHRPGQAYITPNKPVVHVGNGVTLTCSANPPGWPVPQYRWFRDM 451
                        ||.|.::|.        .||...    ..|..|:|.|.               
  Fly   331 ------------GNLTTSVLT--------FTPTID----DRGKFLSCRAE--------------- 356

  Fly   452 DGDIGNTQKILAQGPQYSIPKAHLGSEGK---YHCHAVN-ELGIGKIATIILEVHQPPQFLAKLQ 512
                           |..||::.:....|   ||...|: |||...:                  
  Fly   357 ---------------QSMIPESGMEDGWKLDIYHIPVVSLELGTNSL------------------ 388

  Fly   513 QHMTRRVGDVDYAVTCSAKGKP-TPQIRWIKDGTEILPTRKMFDIRTTPTDAGGGVVAVQS-ILR 575
             :.|.|.| :|....|:.|..| ..::.|..:| :||          |...|.|..|:.|| :|:
  Fly   389 -NSTLREG-IDVFFECNIKSNPWIYEVSWRHNG-KIL----------TNNPAEGIAVSNQSLVLQ 440

  Fly   576 FRGKARPNGNQLLPNDRGLYTCLYENDVNSANSS-MHLRIEHEPIVIHQYNKVAYD--LRESAEV 637
            ...:||          .|:|||:..|......|: :.|.|...| |.....:::|.  ..|:.:|
  Fly   441 NASRAR----------SGIYTCVGSNREGDGESNPVQLDIRFAP-VCRPRQRLSYSSGRHETVKV 494

  Fly   638 VCRVQAYP-KPEFQWQYGNNPSPLTMSSDGHYEISTRMENNDVYTSIL------RIAH---LQHS 692
            .|.:.|.| :..:.|::.                :|:.|..|:..|.:      .|||   :..:
  Fly   495 ACEIDANPAEATYVWKFN----------------ATQGETVDIPASQVAVDRGRSIAHYTPMTEN 543

  Fly   693 DYGEYICRAVNPLDSIRAP--IRLQPKGSPEKPTNLKILEVGHNYAVLNWTPGFNGGFMSTKYLV 755
            |||..:|.|.|.:.....|  ..:.|.|.|:...|..:|........:....||||| :...:::
  Fly   544 DYGTLLCWATNEIGDQSEPCVYTIFPAGEPDPLLNCTVLNQTSTGFQIECIEGFNGG-LQQDFIM 607

  Fly   756 SYRRVATPREQTLSDCSGNGYIPSYQISSSSSNSNHEWIEFNCFKENPCKLAPLDQHQSYMFKVY 820
            ......|.|...:|....    |.:::|.                     |.|   ...|...:.
  Fly   608 EVYMNGTTRHPKISKSKR----PYFEVSG---------------------LVP---GMGYNVFLI 644

  Fly   821 ALNSKGTSGYSNEILATTKVSKIPPPLHVSYDPNSHVLGINVAATCLSLIAVVESLVTRDATVPM 885
            |.||||.|..:...:.|.|            ||....:.|....:...|                
  Fly   645 ANNSKGRSNATILQVYTLK------------DPEKQTVKITFTKSFQGL---------------- 681

  Fly   886 WEIVETLTLLPSGSETTFKEAIINHVSRPAHYT----TATTSGRSLGVGGGSHLGEDRTMALAET 946
                                       ||| ||    ||||:...:       ..||..:.|   
  Fly   682 ---------------------------RPA-YTKTKATATTTSDCV-------CDEDEFLNL--- 708

  Fly   947 AGPGPVVRVKLCLRSNHEHCGAYANAEIGKSYMPHKSSMTT-SALVAIIIASLSFVVFLGLLYAF 1010
             |.|         .|:.|...|....::..:|.|....:.. ..::|.|:.|    :||..|...
  Fly   709 -GKG---------ISHDEGTDADQQEDLSLAYAPVIEDIRPFLGILAGIVGS----IFLVALIIV 759

  Fly  1011 CHCRRKHAAKKE-------SSSVG--GGVGGGNANATANPGSTGAKEYDLDLDASRRPSLSQDPQ 1066
            ...|.:.::.::       .|.||  |||||...|.:...|..|.                    
  Fly   760 IVVRVRGSSGRDRNNYSHPGSGVGGVGGVGGTTGNGSGMGGGGGG-------------------- 804

  Fly  1067 QSQQQPPPPPPYYPTGTLDSKDIGNGNGGMELTLTALHDPDEQLNMQQQQHHSNHGQYQQPKAIL 1131
                         ..||     ..||||.:.|..:                 :|:|..       
  Fly   805 -------------VGGT-----TANGNGSLGLLAS-----------------NNNGSL------- 827

  Fly  1132 GIYGGVAGSGGNNSGG--QHPHSNG-YGYHVTSAIGVDSDSYQVLPSVANSAAGSHGHG------ 1187
                 |.|:.|:|.|.  |..|..| ...||||::.....:..::|        ..||.      
  Fly   828 -----VIGTLGHNGGQSVQDMHRIGRETCHVTSSLDSIDKNPDIIP--------QDGHDLDDEWT 879

  Fly  1188 -SGHGHGLGAGESGPLEATPPTCNISGGSSSNSGINPMQQQHSARANLTNQPTIATASSTN---- 1247
             .|||.               |...:..:..|:.|......|.       .||.|......    
  Fly   880 TKGHGR---------------TYATAAMAEQNAVITSGTYDHL-------MPTYAVVDKKTAPPP 922

  Fly  1248 NYNNHLN-NTNIAHTTNNTNNCTTLKRGHLGNRERERERCQVTAATAATTTALATTITT--TSRN 1309
            .:..::. ||.|          ...|.|...|::::.:: |....|..:.:.|:..:.:  ....
  Fly   923 GHGQYIQYNTLI----------PVSKMGAYANQQQQLQQ-QPQQKTELSYSELSAPLVSGPVGVQ 976

  Fly  1310 AKAATTTTTLAITGSSS---NSNENNYSNAR-DLSQEALWRLQMATAQSQ--------------- 1355
            ..|...:.||...|..:   .:..|.||... .:..|.|..||.|||..:               
  Fly   977 RMAPYCSATLGRPGRQAELKRAEPNIYSQVNVMMDDEILADLQAATASGRSYVAGAVVDNVGGAP 1041

  Fly  1356 ----QIYVERPPSAFSGLVDYS-----GYSPHIPTVTSSLSQQ--SFSPT--QQLAPHEM----- 1402
                |.|..|...|...:..||     |.:..|..||.|...|  :||||  ..:..|.|     
  Fly  1042 NLYVQGYATRIDLAHHPMPMYSTSPMFGTNSTITGVTMSHPSQLATFSPTPPPPIFTHSMVTTGD 1106

  Fly  1403 --LQAAQRYGTLRKSGK------QPPLPPQRKDMQQ 1430
              ||.....|.:..|..      ..||.||::..||
  Fly  1107 GLLQPVTCMGLVATSSAGASVPGPVPLAPQQQQQQQ 1142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 132..228 CDD:472250 17/103 (17%)
Ig strand B 148..152 CDD:409353 0/3 (0%)
Ig strand C 162..166 CDD:409353 1/3 (33%)
Ig strand E 190..194 CDD:409353 1/3 (33%)
Ig strand F 204..209 CDD:409353 0/4 (0%)
Ig strand G 221..224 CDD:409353 0/2 (0%)
Ig 238..313 CDD:472250 15/76 (20%)
Ig strand B 250..254 CDD:409353 0/3 (0%)
Ig strand C 264..268 CDD:409353 1/3 (33%)
Ig strand E 278..282 CDD:409353 1/3 (33%)
Ig strand F 292..297 CDD:409353 2/4 (50%)
Ig strand G 306..309 CDD:409353 0/2 (0%)
Ig_3 316..385 CDD:464046 15/69 (22%)
Ig_2 416..501 CDD:464026 16/88 (18%)
Ig 523..614 CDD:472250 24/93 (26%)
Ig strand B 524..528 CDD:409568 0/3 (0%)
Ig strand C 537..541 CDD:409568 0/3 (0%)
Ig strand E 566..570 CDD:409568 1/3 (33%)
Ig strand F 594..599 CDD:409568 3/4 (75%)
Ig strand G 607..610 CDD:409568 1/3 (33%)
Ig_3 618..703 CDD:464046 21/96 (22%)
FN3 720..838 CDD:238020 22/117 (19%)
side-VIIINP_001097382.2 IG_like 60..166 CDD:214653 25/115 (22%)
Ig strand B 69..72 CDD:409353
Ig strand C 85..89 CDD:409353 0/1 (0%)
Ig strand E 131..135 CDD:409353 1/3 (33%)
Ig strand F 145..150 CDD:409353 1/4 (25%)
Ig 189..273 CDD:472250 32/173 (18%)
Ig strand B 197..201 CDD:409353 0/3 (0%)
Ig strand C 211..215 CDD:409353 1/3 (33%)
Ig strand E 237..241 CDD:409353 2/17 (12%)
Ig strand F 252..257 CDD:409353 2/4 (50%)
Ig strand G 267..270 CDD:409353 0/2 (0%)
Ig 290..373 CDD:472250 26/155 (17%)
Ig strand B 296..300 CDD:409353 0/3 (0%)
Ig strand C 310..314 CDD:409353 0/3 (0%)
Ig strand F 350..355 CDD:409353 2/4 (50%)
Ig strand G 366..369 CDD:409353 0/2 (0%)
Ig_3 377..456 CDD:464046 28/119 (24%)
Blue background indicates that the domain is not in the aligned region.

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