DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fred and ed

DIOPT Version :9

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_001260013.1 Gene:ed / 33619 FlyBaseID:FBgn0000547 Length:1332 Species:Drosophila melanogaster


Alignment Length:1477 Identity:766/1477 - (51%)
Similarity:938/1477 - (63%) Gaps:265/1477 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 DDSLDTREGVDLVLKCRFTEHYDSTDFTFYWARWTCCPTLFENVAIGDVQLNSNYRLDFRPSRGI 86
            |:|:||||..||.|||||.:.|::.||:|:|.|||..|..|:|||||:|||:|.|||||:|.|||
  Fly    43 DESIDTRENADLTLKCRFNDKYEANDFSFFWTRWTANPAQFDNVAIGEVQLSSGYRLDFQPERGI 107

  Fly    87 YDLQIKNTSYNRDNGRFECRIKAKGTGADVHQEFYNLTVLTAPHPPMVTPGNLAVATEEKPLELT 151
            |||||||.||||||||||||||||||||||||||:||||||.||||:::|||:|||||:||:|||
  Fly   108 YDLQIKNVSYNRDNGRFECRIKAKGTGADVHQEFHNLTVLTPPHPPVISPGNIAVATEDKPMELT 172

  Fly   152 CSSIGGSPDPMITWYREGSTVPLQSYALKGGSKNHYTNATLQIVPRRADDGAKYKCVVWNRAMPE 216
            ||||||||||.||||||||..||.:..||||:|:..|||||.|:|||.||||||||||.||||.|
  Fly   173 CSSIGGSPDPTITWYREGSNTPLPATVLKGGTKDQPTNATLSIIPRREDDGAKYKCVVRNRAMNE 237

  Fly   217 GHMLETSVTLNVNYYPRVEVGPQNPLKVERDHVAKLDCRVDAKPMVSNVRWSRNGQYVSATPTHT 281
            |..||.:.||||||||||||||:|||:||||..|||:|.|||||.|.||||:|||:::|::..||
  Fly   238 GKRLEATATLNVNYYPRVEVGPENPLRVERDRTAKLECNVDAKPKVPNVRWNRNGRFISSSLVHT 302

  Fly   282 IYRVNRHHAGKYTCSADNGLGKTGEKDIVLDVLYPPIVFIESKTHEAEEGETVLIRCNVTANPSP 346
            |:||:...||||||.||||||||||::::||:||||:|.|||||.|||||:||.|||||||||:|
  Fly   303 IHRVSVQDAGKYTCIADNGLGKTGEQELILDILYPPMVVIESKTREAEEGDTVTIRCNVTANPAP 367

  Fly   347 INVEWLKEGAPDFRYTGELLTLGSVRAEHAGNYICRSVNIMQPFSSKRVEGVGNSTVALLVRHRP 411
            :.:|||||.:|||||.|::|||.||||:||||||||:|||||....:|.|.||||||||||||||
  Fly   368 VTIEWLKENSPDFRYNGDVLTLTSVRADHAGNYICRAVNIMQSQGMERSERVGNSTVALLVRHRP 432

  Fly   412 GQAYITPNKPVVHVGNGVTLTCSANPPGWPVPQYRWFRDMDGDIGNTQKILAQGPQYSIPKAHLG 476
            ||||||||||||||||||||||||||||||||||||||||||:..:|||||||||||||||||||
  Fly   433 GQAYITPNKPVVHVGNGVTLTCSANPPGWPVPQYRWFRDMDGEFSSTQKILAQGPQYSIPKAHLG 497

  Fly   477 SEGKYHCHAVNELGIGKIATIILEVHQPPQFLAKLQQHMTRRVGDVDYAVTCSAKGKPTPQIRWI 541
            :|||||||||||||||.:|||:||:||||||||||||||||||.|.||.|||||||||.|.::|:
  Fly   498 NEGKYHCHAVNELGIGMMATIVLEIHQPPQFLAKLQQHMTRRVADTDYTVTCSAKGKPAPSVKWL 562

  Fly   542 KDGTEILPTRKMFDIRTTPTDAGGGVVAVQSILRFRGKARPNGNQLLPNDRGLYTCLYENDVNSA 606
            ||..||||...:::::|.|.....|:|.|||.|:||||||||||.|:|.|||||||||:|:||||
  Fly   563 KDAVEILPEENLYEVQTNPDQGLNGMVTVQSQLKFRGKARPNGNALVPGDRGLYTCLYQNEVNSA 627

  Fly   607 NSSMHLRIEHEPIVIHQYNKVAYDLRESAEVVCRVQAYPKPEFQWQYGNNPSPLTMSSDGHYEIS 671
            ||||.|||||||||:|||||||:|:||:|||||:||||||||||||:||||||||||||||||||
  Fly   628 NSSMQLRIEHEPIVLHQYNKVAFDIRETAEVVCKVQAYPKPEFQWQFGNNPSPLTMSSDGHYEIS 692

  Fly   672 TRMENNDVYTSILRIAHLQHSDYGEYICRAVNPLDSIRAPIRLQPKGSPEKPTNLKILEVGHNYA 736
            |..:|||:|||:|:|..|.|||||||.||..|.||:||||||||.||.|||||||:..||||||.
  Fly   693 TTTDNNDIYTSVLKINSLTHSDYGEYTCRVANTLDTIRAPIRLQQKGPPEKPTNLRATEVGHNYV 757

  Fly   737 VLNWTPGFNGGFMSTKYLVSYRRVATPR-EQTLSDCSGNGYIPSYQISSSSSNSNHEWIEFNCFK 800
            .|:|.|||:||...||:.|||||||.|| ||.:.||            ::.:|||..|:|.:|.:
  Fly   758 SLSWDPGFDGGLSKTKFFVSYRRVAMPREEQLIPDC------------ATLANSNSAWVEVDCQR 810

  Fly   801 ENPCKLAPLDQHQSYMFKVYALNSKGTSGYSNEILATTKVSKIPPPLHVSYDPNSHVLGINVAAT 865
            :.|||:..|:|||||.|||.|||.|..|.||:||:.|||||:|||||.|:|:||:..|||:|.||
  Fly   811 DIPCKVTALEQHQSYAFKVKALNPKSDSPYSSEIMVTTKVSRIPPPLQVTYEPNTRTLGIDVGAT 875

  Fly   866 CLSLIAVVESLVTRDATVPMWEIVETL-TLLPSGSETTFKEAIINHVSRPAHYTTATTSGRSLG- 928
            ||:|:|||||:|..|:.:..||:|.|: .|..||:..|.||.||:               |.:| 
  Fly   876 CLNLVAVVESMVNADSPMAAWEVVTTMDNLQLSGNGPTHKEKIID---------------RIIGA 925

  Fly   929 --VGGGSHLG------ED----RTMALAETAGPGPVVRVKLCLRSNHEHCGAYANAEIGKSYMPH 981
              ||||..||      ||    .::||.:.  ..|.||||||||:|.||||.|.:||||:.|:..
  Fly   926 RRVGGGRALGHTISEDEDDNGLNSLALEDE--NSPTVRVKLCLRTNPEHCGDYTDAEIGRPYIAE 988

  Fly   982 KSSMTTSALVAIIIASLSFVVFLGLLYAFCHCRRKHAAKKESSSVGGGVGGGNANATANPGSTGA 1046
            .:::.|..|:|||::.:.|.:|.||:..||.|:|..:.|                      |..|
  Fly   989 ANALATPTLIAIIVSCVVFALFAGLILMFCRCKRNQSKK----------------------SAAA 1031

  Fly  1047 KEYDLDLDASRRPSLSQDPQQSQQQPPPPPPYYPTGTLDSKDIGNGNGGMELTLTALHDPDEQLN 1111
            |:|::|   |.|||:     .:.||...||||||...||:|.:.             |..|..|:
  Fly  1032 KDYEMD---SVRPSI-----VAAQQNQAPPPYYPASGLDNKALE-------------HSMDLALS 1075

  Fly  1112 MQQQQHHSNHGQYQQPKAILGIYGGVAGSGGNNSGGQHPHSNGYGYHVTS-AIGVDSDSYQVLPS 1175
            |:.|            |..|                 :...|||.||..| .:||......|...
  Fly  1076 MEDQ------------KTAL-----------------YATQNGYSYHPGSGVVGVGMGGGVVGVG 1111

  Fly  1176 VANSAAGSHGHGSGHGHGLGAGESGPLEATPPTCNISGGSSSNSGINPMQQQHSARANLTNQPTI 1240
            |..|.....|.|.|...|.|.|.:|          |.|.|                         
  Fly  1112 VGGSVVSGMGGGVGGIGGSGVGVNG----------IPGLS------------------------- 1141

  Fly  1241 ATASSTNNYNNHLNNTNIAHTTNNTNNCTTLKRGHLGNRERERERCQVTAATAATTTALATTITT 1305
                              |||.....   .:..|::                             
  Fly  1142 ------------------AHTMPGNE---WVNMGYM----------------------------- 1156

  Fly  1306 TSRNAKAATTTTTLAITGSSSNSNENNYSNARD----LSQEALWRLQMATAQ--SQQ-------- 1356
                                    ||||||:.:    .||::||:::|:.|.  :||        
  Fly  1157 ------------------------ENNYSNSNNGGSVNSQDSLWQVKMSAAAVGNQQGMVQAPMN 1197

  Fly  1357 IYVERPPS---------AFSGLVDYSGYSPHIPTVTSSLSQQSFSPTQQLAPHEMLQAAQRYGTL 1412
            .|||:.|:         .:..:.||:.| ||:....|.:..:..:......|......:..|.::
  Fly  1198 QYVEQQPAYGYDPLTHGGYGAVDDYAPY-PHLTATPSQVGDEYHNLRNSQNPSRQDYCSDPYASV 1261

  Fly  1413 RKSGKQP--------------PLPPQRKDMQQ-QAKPPQQMADIIQD 1444
            :|..|:.              |.|...:.::| :..||||...:..|
  Fly  1262 QKPKKRVDQHLDSPYHDVSGLPNPYNMEHLEQDEVLPPQQHMSLSYD 1308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 29..126 CDD:299845 72/96 (75%)
IG_like 141..228 CDD:214653 63/86 (73%)
Ig 147..228 CDD:299845 58/80 (73%)
I-set 232..313 CDD:254352 54/80 (68%)
IGc2 250..302 CDD:197706 33/51 (65%)
IG_like 323..385 CDD:214653 46/61 (75%)
IGc2 330..385 CDD:197706 40/54 (74%)
Ig_2 416..501 CDD:290606 76/84 (90%)
IG_like 418..501 CDD:214653 74/82 (90%)
I-set 505..612 CDD:254352 73/106 (69%)
Ig 526..611 CDD:143165 54/84 (64%)
IG_like 633..715 CDD:214653 64/81 (79%)
Ig 635..713 CDD:143165 61/77 (79%)
FN3 720..838 CDD:238020 62/118 (53%)
edNP_001260013.1 Ig 50..147 CDD:299845 72/96 (75%)
I-set 146..249 CDD:254352 74/102 (73%)
Ig 168..249 CDD:299845 58/80 (73%)
IGc2 268..323 CDD:197706 34/54 (63%)
Ig_3 341..406 CDD:290638 48/64 (75%)
Ig_2 437..514 CDD:290606 71/76 (93%)
I-set 526..633 CDD:254352 73/106 (69%)
Ig 546..632 CDD:143165 54/85 (64%)
IG_like 654..736 CDD:214653 64/81 (79%)
Ig 656..734 CDD:143165 61/77 (79%)
FN3 741..848 CDD:238020 62/118 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446728
Domainoid 1 1.000 43 1.000 Domainoid score I12366
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 276 1.000 Inparanoid score I1776
Isobase 1 0.950 - 0 Normalized mean entropy S7699
OMA 1 1.010 - - QHG26891
OrthoDB 1 1.010 - - D35531at33208
OrthoFinder 1 1.000 - - FOG0008560
OrthoInspector 1 1.000 - - otm14409
orthoMCL 1 0.900 - - OOG6_112354
Panther 1 1.100 - - P PTHR11640
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X7644
1312.760

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