DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fred and ed

DIOPT Version :10

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_523469.2 Gene:ed / 33619 FlyBaseID:FBgn0000547 Length:1332 Species:Drosophila melanogaster


Alignment Length:1477 Identity:766/1477 - (51%)
Similarity:938/1477 - (63%) Gaps:265/1477 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 DDSLDTREGVDLVLKCRFTEHYDSTDFTFYWARWTCCPTLFENVAIGDVQLNSNYRLDFRPSRGI 86
            |:|:||||..||.|||||.:.|::.||:|:|.|||..|..|:|||||:|||:|.|||||:|.|||
  Fly    43 DESIDTRENADLTLKCRFNDKYEANDFSFFWTRWTANPAQFDNVAIGEVQLSSGYRLDFQPERGI 107

  Fly    87 YDLQIKNTSYNRDNGRFECRIKAKGTGADVHQEFYNLTVLTAPHPPMVTPGNLAVATEEKPLELT 151
            |||||||.||||||||||||||||||||||||||:||||||.||||:::|||:|||||:||:|||
  Fly   108 YDLQIKNVSYNRDNGRFECRIKAKGTGADVHQEFHNLTVLTPPHPPVISPGNIAVATEDKPMELT 172

  Fly   152 CSSIGGSPDPMITWYREGSTVPLQSYALKGGSKNHYTNATLQIVPRRADDGAKYKCVVWNRAMPE 216
            ||||||||||.||||||||..||.:..||||:|:..|||||.|:|||.||||||||||.||||.|
  Fly   173 CSSIGGSPDPTITWYREGSNTPLPATVLKGGTKDQPTNATLSIIPRREDDGAKYKCVVRNRAMNE 237

  Fly   217 GHMLETSVTLNVNYYPRVEVGPQNPLKVERDHVAKLDCRVDAKPMVSNVRWSRNGQYVSATPTHT 281
            |..||.:.||||||||||||||:|||:||||..|||:|.|||||.|.||||:|||:::|::..||
  Fly   238 GKRLEATATLNVNYYPRVEVGPENPLRVERDRTAKLECNVDAKPKVPNVRWNRNGRFISSSLVHT 302

  Fly   282 IYRVNRHHAGKYTCSADNGLGKTGEKDIVLDVLYPPIVFIESKTHEAEEGETVLIRCNVTANPSP 346
            |:||:...||||||.||||||||||::::||:||||:|.|||||.|||||:||.|||||||||:|
  Fly   303 IHRVSVQDAGKYTCIADNGLGKTGEQELILDILYPPMVVIESKTREAEEGDTVTIRCNVTANPAP 367

  Fly   347 INVEWLKEGAPDFRYTGELLTLGSVRAEHAGNYICRSVNIMQPFSSKRVEGVGNSTVALLVRHRP 411
            :.:|||||.:|||||.|::|||.||||:||||||||:|||||....:|.|.||||||||||||||
  Fly   368 VTIEWLKENSPDFRYNGDVLTLTSVRADHAGNYICRAVNIMQSQGMERSERVGNSTVALLVRHRP 432

  Fly   412 GQAYITPNKPVVHVGNGVTLTCSANPPGWPVPQYRWFRDMDGDIGNTQKILAQGPQYSIPKAHLG 476
            ||||||||||||||||||||||||||||||||||||||||||:..:|||||||||||||||||||
  Fly   433 GQAYITPNKPVVHVGNGVTLTCSANPPGWPVPQYRWFRDMDGEFSSTQKILAQGPQYSIPKAHLG 497

  Fly   477 SEGKYHCHAVNELGIGKIATIILEVHQPPQFLAKLQQHMTRRVGDVDYAVTCSAKGKPTPQIRWI 541
            :|||||||||||||||.:|||:||:||||||||||||||||||.|.||.|||||||||.|.::|:
  Fly   498 NEGKYHCHAVNELGIGMMATIVLEIHQPPQFLAKLQQHMTRRVADTDYTVTCSAKGKPAPSVKWL 562

  Fly   542 KDGTEILPTRKMFDIRTTPTDAGGGVVAVQSILRFRGKARPNGNQLLPNDRGLYTCLYENDVNSA 606
            ||..||||...:::::|.|.....|:|.|||.|:||||||||||.|:|.|||||||||:|:||||
  Fly   563 KDAVEILPEENLYEVQTNPDQGLNGMVTVQSQLKFRGKARPNGNALVPGDRGLYTCLYQNEVNSA 627

  Fly   607 NSSMHLRIEHEPIVIHQYNKVAYDLRESAEVVCRVQAYPKPEFQWQYGNNPSPLTMSSDGHYEIS 671
            ||||.|||||||||:|||||||:|:||:|||||:||||||||||||:||||||||||||||||||
  Fly   628 NSSMQLRIEHEPIVLHQYNKVAFDIRETAEVVCKVQAYPKPEFQWQFGNNPSPLTMSSDGHYEIS 692

  Fly   672 TRMENNDVYTSILRIAHLQHSDYGEYICRAVNPLDSIRAPIRLQPKGSPEKPTNLKILEVGHNYA 736
            |..:|||:|||:|:|..|.|||||||.||..|.||:||||||||.||.|||||||:..||||||.
  Fly   693 TTTDNNDIYTSVLKINSLTHSDYGEYTCRVANTLDTIRAPIRLQQKGPPEKPTNLRATEVGHNYV 757

  Fly   737 VLNWTPGFNGGFMSTKYLVSYRRVATPR-EQTLSDCSGNGYIPSYQISSSSSNSNHEWIEFNCFK 800
            .|:|.|||:||...||:.|||||||.|| ||.:.||            ::.:|||..|:|.:|.:
  Fly   758 SLSWDPGFDGGLSKTKFFVSYRRVAMPREEQLIPDC------------ATLANSNSAWVEVDCQR 810

  Fly   801 ENPCKLAPLDQHQSYMFKVYALNSKGTSGYSNEILATTKVSKIPPPLHVSYDPNSHVLGINVAAT 865
            :.|||:..|:|||||.|||.|||.|..|.||:||:.|||||:|||||.|:|:||:..|||:|.||
  Fly   811 DIPCKVTALEQHQSYAFKVKALNPKSDSPYSSEIMVTTKVSRIPPPLQVTYEPNTRTLGIDVGAT 875

  Fly   866 CLSLIAVVESLVTRDATVPMWEIVETL-TLLPSGSETTFKEAIINHVSRPAHYTTATTSGRSLG- 928
            ||:|:|||||:|..|:.:..||:|.|: .|..||:..|.||.||:               |.:| 
  Fly   876 CLNLVAVVESMVNADSPMAAWEVVTTMDNLQLSGNGPTHKEKIID---------------RIIGA 925

  Fly   929 --VGGGSHLG------ED----RTMALAETAGPGPVVRVKLCLRSNHEHCGAYANAEIGKSYMPH 981
              ||||..||      ||    .::||.:.  ..|.||||||||:|.||||.|.:||||:.|:..
  Fly   926 RRVGGGRALGHTISEDEDDNGLNSLALEDE--NSPTVRVKLCLRTNPEHCGDYTDAEIGRPYIAE 988

  Fly   982 KSSMTTSALVAIIIASLSFVVFLGLLYAFCHCRRKHAAKKESSSVGGGVGGGNANATANPGSTGA 1046
            .:::.|..|:|||::.:.|.:|.||:..||.|:|..:.|                      |..|
  Fly   989 ANALATPTLIAIIVSCVVFALFAGLILMFCRCKRNQSKK----------------------SAAA 1031

  Fly  1047 KEYDLDLDASRRPSLSQDPQQSQQQPPPPPPYYPTGTLDSKDIGNGNGGMELTLTALHDPDEQLN 1111
            |:|::|   |.|||:     .:.||...||||||...||:|.:.             |..|..|:
  Fly  1032 KDYEMD---SVRPSI-----VAAQQNQAPPPYYPASGLDNKALE-------------HSMDLALS 1075

  Fly  1112 MQQQQHHSNHGQYQQPKAILGIYGGVAGSGGNNSGGQHPHSNGYGYHVTS-AIGVDSDSYQVLPS 1175
            |:.|            |..|                 :...|||.||..| .:||......|...
  Fly  1076 MEDQ------------KTAL-----------------YATQNGYSYHPGSGVVGVGMGGGVVGVG 1111

  Fly  1176 VANSAAGSHGHGSGHGHGLGAGESGPLEATPPTCNISGGSSSNSGINPMQQQHSARANLTNQPTI 1240
            |..|.....|.|.|...|.|.|.:|          |.|.|                         
  Fly  1112 VGGSVVSGMGGGVGGIGGSGVGVNG----------IPGLS------------------------- 1141

  Fly  1241 ATASSTNNYNNHLNNTNIAHTTNNTNNCTTLKRGHLGNRERERERCQVTAATAATTTALATTITT 1305
                              |||.....   .:..|::                             
  Fly  1142 ------------------AHTMPGNE---WVNMGYM----------------------------- 1156

  Fly  1306 TSRNAKAATTTTTLAITGSSSNSNENNYSNARD----LSQEALWRLQMATAQ--SQQ-------- 1356
                                    ||||||:.:    .||::||:::|:.|.  :||        
  Fly  1157 ------------------------ENNYSNSNNGGSVNSQDSLWQVKMSAAAVGNQQGMVQAPMN 1197

  Fly  1357 IYVERPPS---------AFSGLVDYSGYSPHIPTVTSSLSQQSFSPTQQLAPHEMLQAAQRYGTL 1412
            .|||:.|:         .:..:.||:.| ||:....|.:..:..:......|......:..|.::
  Fly  1198 QYVEQQPAYGYDPLTHGGYGAVDDYAPY-PHLTATPSQVGDEYHNLRNSQNPSRQDYCSDPYASV 1261

  Fly  1413 RKSGKQP--------------PLPPQRKDMQQ-QAKPPQQMADIIQD 1444
            :|..|:.              |.|...:.::| :..||||...:..|
  Fly  1262 QKPKKRVDQHLDSPYHDVSGLPNPYNMEHLEQDEVLPPQQHMSLSYD 1308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 132..228 CDD:472250 68/95 (72%)
Ig strand B 148..152 CDD:409353 2/3 (67%)
Ig strand C 162..166 CDD:409353 2/3 (67%)
Ig strand E 190..194 CDD:409353 3/3 (100%)
Ig strand F 204..209 CDD:409353 4/4 (100%)
Ig strand G 221..224 CDD:409353 1/2 (50%)
Ig 238..313 CDD:472250 48/74 (65%)
Ig strand B 250..254 CDD:409353 3/3 (100%)
Ig strand C 264..268 CDD:409353 3/3 (100%)
Ig strand E 278..282 CDD:409353 1/3 (33%)
Ig strand F 292..297 CDD:409353 4/4 (100%)
Ig strand G 306..309 CDD:409353 1/2 (50%)
Ig_3 316..385 CDD:464046 51/68 (75%)
Ig_2 416..501 CDD:464026 76/84 (90%)
Ig 523..614 CDD:472250 58/90 (64%)
Ig strand B 524..528 CDD:409568 2/3 (67%)
Ig strand C 537..541 CDD:409568 0/3 (0%)
Ig strand E 566..570 CDD:409568 2/3 (67%)
Ig strand F 594..599 CDD:409568 4/4 (100%)
Ig strand G 607..610 CDD:409568 2/2 (100%)
Ig_3 618..703 CDD:464046 67/84 (80%)
FN3 720..838 CDD:238020 62/118 (53%)
edNP_523469.2 V-set 50..147 CDD:462230 72/96 (75%)
Ig 153..249 CDD:472250 68/95 (72%)
Ig strand B 169..173 CDD:409353 2/3 (67%)
Ig strand C 183..187 CDD:409353 2/3 (67%)
Ig strand E 211..215 CDD:409353 3/3 (100%)
Ig strand F 225..230 CDD:409353 4/4 (100%)
Ig strand G 242..245 CDD:409353 1/2 (50%)
Ig_3 253..320 CDD:464046 44/66 (67%)
Ig_3 337..406 CDD:464046 51/68 (75%)
Ig_2 437..>504 CDD:464026 61/66 (92%)
Ig 525..635 CDD:472250 75/109 (69%)
Ig strand B 545..549 CDD:409568 2/3 (67%)
Ig strand C 558..562 CDD:409568 0/3 (0%)
Ig strand E 587..591 CDD:409568 2/3 (67%)
Ig strand F 615..620 CDD:409568 4/4 (100%)
Ig strand G 628..631 CDD:409568 2/2 (100%)
Ig_3 639..724 CDD:464046 67/84 (80%)
FN3 741..848 CDD:238020 62/118 (53%)

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