DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fred and rst

DIOPT Version :10

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_525058.2 Gene:rst / 31290 FlyBaseID:FBgn0003285 Length:764 Species:Drosophila melanogaster


Alignment Length:957 Identity:192/957 - (20%)
Similarity:329/957 - (34%) Gaps:302/957 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSTIKLLIIGQLWLSIGLISGDD---------SLDTRE-----GVDLVLKCRF-----TEHYDST 46
            :.|::||::..:   :|::....         :::.::     |..:.|.||.     |..:...
  Fly     2 LHTMQLLLLATI---VGMVRSSPYTSYQNQRFAMEPQDQTAVVGARVTLPCRVINKQGTLQWTKD 63

  Fly    47 DFTFYWARWTCCPTLFENVAIGDVQLNSNYRLDFRPSRGIYDLQIKNTSYNRDNGRFECRIKAKG 111
            ||....:|..   :.||..|:.......:|.||      ||.:.:.      |:.|::|::....
  Fly    64 DFGLGTSRDL---SGFERYAMVGSDEEGDYSLD------IYPVMLD------DDARYQCQVSPGP 113

  Fly   112 TGAD-VHQEFYNLTVLTAPHPPMVTPGNLAVATEEKPLELTCSSIGGSPDPMITWYR-------- 167
            .|.. :...|..||||..|..|.:|.|::..|||::.:|:.|.|:||.|...|||..        
  Fly   114 EGQPAIRSTFAGLTVLVPPEAPKITQGDVIYATEDRKVEIECVSVGGKPAAEITWIDGLGNVLTD 178

  Fly   168 --EGSTVPLQSYALKGGSKNHYTNATLQIVPRRADDGAKYKCVVWNRAMPEGHMLETSVTLNVNY 230
              |.:.:||..      .:.....:.|::.|::......:.|...|.|  :.......:.:.|.|
  Fly   179 NIEYTVIPLPD------QRRFTAKSVLRLTPKKEHHNTNFSCQAQNTA--DRTYRSAKIRVEVKY 235

  Fly   231 YPRVEVGPQNPLK-----------------------VERDHVAKLDCRVDAKPMVSNVRWSRNGQ 272
            .|:|:|.....|.                       ||...| :|:||.||.|.....||..|.:
  Fly   236 APKVKVNVMGSLPGGAGGSVGGAGGGSVHMSTGSRIVEHSQV-RLECRADANPSDVRYRWFINDE 299

  Fly   273 -YVSATPTHTIYR--VNRHHAGKYTCSADNGLGKTGEKDIVLDVLYPPIVFIESKTHEAEEGETV 334
             .:....|..:.|  ..:.|.....|...|.:||:.:.: .||:.|.|......::.||:.|..|
  Fly   300 PIIGGQKTEMVIRNVTRKFHDAIVKCEVQNSVGKSEDSE-TLDISYAPSFRQRPQSMEADVGSVV 363

  Fly   335 LIRCNVTANPSPINVEWLKEGAPDFRYTGELLTLG-SVRAEHAGNYICRSVNIMQPFSSKRVEGV 398
            .:.|.|.:||.| .:.|::.  |..|..|....|. ||..|.||.|.|:: |:            
  Fly   364 SLTCEVDSNPQP-EIVWIQH--PSDRVVGTSTNLTFSVSNETAGRYYCKA-NV------------ 412

  Fly   399 GNSTVALLVRHRPGQAYITPN-------KPVVH--------VGNGVTLTCSANPPGWPVPQYR-- 446
                        ||.|.|:.:       .|.:.        ||:...:.|.|:    .||:.|  
  Fly   413 ------------PGYAEISADAYVYLKGSPAIGSQRTQYGLVGDTARIECFAS----SVPRARHV 461

  Fly   447 -WF---RDMDGDIGNTQKILAQGPQYSIPKAHLGSE------GKYHCHAVNELGIGKIATIILEV 501
             |.   :::..:.|:...||.......:....:..:      |||:|..||:.| ..:|.|.|:.
  Fly   462 SWTFNGQEISSESGHDYSILVDAVPGGVKSTLIIRDSQAYHYGKYNCTVVNDYG-NDVAEIQLQA 525

  Fly   502 HQPPQFLAKLQQHMTRRVGDVDYA-------------VTCSAKGKPTPQIRWIKDGTEILPTRKM 553
            .:....|..:       ||.:...             :.|..:.|              ||    
  Fly   526 KKSVSLLMTI-------VGGISVVAFLLVLTILVVVYIKCKKRTK--------------LP---- 565

  Fly   554 FDIRTTPTDAGGGVVAVQSILRFRGKARPNGN---QLLPNDRGLYTCLYENDVNSANSSMHLRIE 615
                  |.|    |::...|.:       ||.   :|.|.||            ::|        
  Fly   566 ------PAD----VISEHQITK-------NGGVSCKLEPGDR------------TSN-------- 593

  Fly   616 HEPIVIHQYNKVAYDLRESAEVVCRVQAYPKPEFQWQYGNNPSPLTMSSDGHYEISTRMENNDVY 680
                    |:.:..|:  |...|      |..::...|...|..||..|......||.|:||  :
  Fly   594 --------YSDLKVDI--SGGYV------PYGDYSTHYSPPPQYLTTCSTKSNGSSTIMQNN--H 640

  Fly   681 TSILRIAHLQHSDYGEYICRAVNPLDSIRAPIRLQPKGSPEKPTNLKILEVGHNYAVLNWTPGFN 745
            .:.|::...|...:.::                      ..:.|.|.          :.:....:
  Fly   641 QNQLQLQQQQQQSHHQH----------------------HTQTTTLP----------MTFLTNSS 673

  Fly   746 GGFMSTKYLVSYRRVATPREQTLSDCSGNGYIPSYQ-----ISSSSSNSNHEWIEFNCFKENPCK 805
            ||.: |..::..|.:.          ..|| :||.|     :.|||.|.       :|..::...
  Fly   674 GGSL-TGSIIGSREIR----------QDNG-LPSLQSTTASVVSSSPNG-------SCSNQSTTA 719

  Fly   806 LAPLDQH---QSYMFKVYALNSKGTSGYSNEILATTKVSKIPPPLHV 849
            ......|   .|.|  ..:::.:.::.|.|..|.::..|.:|||..|
  Fly   720 ATTTTTHVVVPSSM--ALSVDPRYSAIYGNPYLRSSNSSLLPPPTAV 764

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 132..228 CDD:472250 23/105 (22%)
Ig strand B 148..152 CDD:409353 1/3 (33%)
Ig strand C 162..166 CDD:409353 2/3 (67%)
Ig strand E 190..194 CDD:409353 1/3 (33%)
Ig strand F 204..209 CDD:409353 1/4 (25%)
Ig strand G 221..224 CDD:409353 0/2 (0%)
Ig 238..313 CDD:472250 21/100 (21%)
Ig strand B 250..254 CDD:409353 1/3 (33%)
Ig strand C 264..268 CDD:409353 1/3 (33%)
Ig strand E 278..282 CDD:409353 1/3 (33%)
Ig strand F 292..297 CDD:409353 1/4 (25%)
Ig strand G 306..309 CDD:409353 0/2 (0%)
Ig_3 316..385 CDD:464046 22/69 (32%)
Ig_2 416..501 CDD:464026 23/111 (21%)
Ig 523..614 CDD:472250 15/106 (14%)
Ig strand B 524..528 CDD:409568 0/16 (0%)
Ig strand C 537..541 CDD:409568 0/3 (0%)
Ig strand E 566..570 CDD:409568 1/3 (33%)
Ig strand F 594..599 CDD:409568 0/4 (0%)
Ig strand G 607..610 CDD:409568 1/2 (50%)
Ig_3 618..703 CDD:464046 17/84 (20%)
FN3 720..838 CDD:238020 22/125 (18%)
rstNP_525058.2 Ig 29..110 CDD:472250 19/95 (20%)
Ig strand B 45..49 CDD:409353 1/3 (33%)
Ig strand E 90..94 CDD:409353 3/9 (33%)
Ig strand F 104..109 CDD:409353 2/4 (50%)
C2-set_2 135..225 CDD:400489 23/97 (24%)
Ig strand B 151..155 CDD:409353 1/3 (33%)
Ig strand C 165..169 CDD:409353 2/3 (67%)
Ig strand E 197..201 CDD:409353 1/3 (33%)
Ig strand F 211..216 CDD:409353 1/4 (25%)
Ig strand G 226..229 CDD:409353 0/2 (0%)
Ig 271..340 CDD:472250 19/70 (27%)
Ig_3 346..411 CDD:464046 22/68 (32%)
Ig 428..524 CDD:472250 21/100 (21%)
Ig strand B 446..450 CDD:409353 0/3 (0%)
Ig strand C 460..464 CDD:409353 0/3 (0%)
Ig strand E 491..495 CDD:409353 0/3 (0%)
Ig strand F 505..510 CDD:409353 3/4 (75%)
Ig strand G 518..521 CDD:409353 1/2 (50%)

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