DRSC/TRiP Functional Genomics Resources

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Protein Alignment fred and Siglec1

DIOPT Version :9

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:XP_017447235.1 Gene:Siglec1 / 311426 RGDID:1311953 Length:1708 Species:Rattus norvegicus


Alignment Length:958 Identity:200/958 - (20%)
Similarity:333/958 - (34%) Gaps:249/958 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 DTREGVDLVLKC----------RFTEHYDSTDFTFYWARWTCCPTLFENVAIGDVQLNSNYRLDF 80
            :.||||::.:.|          :.:.|:...|           ||.         .:.||:: ..
  Rat   149 ELREGVEVNVNCSTPYLCLQEKQVSLHWQGQD-----------PTR---------SVISNFQ-SL 192

  Fly    81 RPSRGIYDLQIKNTSYNRDNGRFECRIKAKGTGADVHQEFYNLTVLTAPHPPM------------ 133
            .|: |:|.....:.:.:..:.|...|.:.........:|.|    |...|.|.            
  Rat   193 EPT-GVYHQTTLHMAPSWQDHRRTLRCQLSLATHSSQKEVY----LQVQHAPKGVEILLSSSGRN 252

  Fly   134 VTPGNLAVATEEKPLELTCSSIGGSPD-PMITWYREGSTVPLQSYALKGGSKNHYTNATLQIVPR 197
            :.||||        :.|||......|. ..:.|.::|..:.         :|.|    .||:...
  Rat   253 ILPGNL--------VTLTCRVNSSYPAVSSVDWVKDGVNLT---------AKGH----VLQLSSA 296

  Fly   198 RADDGAKYKCVVWNRAMPEGHMLETSVTLNVNYYPRVEVGPQNPLKVERDHVAKLDCRVDAKPMV 262
            ..:|...|.|...|..   |.:....::|:| :...|::.|..|: :|.:.|..|.......|..
  Rat   297 TWNDSGVYTCQATNNV---GSLASPPLSLHV-FMAEVKINPAGPI-LENETVTLLCSTPKEAPQE 356

  Fly   263 SNVRWSRNGQYV--SATPTHTIYRVNRHHAGKYTCSADNGLGKTGEKDIVLDVLYPPIVFIESKT 325
            ....|.:|...:  :..||..:..|.|...|.|.|...|..|......:.:.|.|||:....:..
  Rat   357 LRYSWYKNNILLEDAHAPTLHLPAVTRADTGFYFCEVQNTQGSERSGPVSVVVRYPPLTPDLTTF 421

  Fly   326 HEAEEGETVLIRCNVTANPSPINVEWLKEGAPDFRYTGELLTLGSVRAEH----------AGNYI 380
            .|.:.|...:..|:|.:.|....|  |..|.         |||.|...|:          |.|.:
  Rat   422 LETQAGLVGIFHCSVISEPLATVV--LSHGG---------LTLASSSGENDFNPRFSISSAPNSV 475

  Fly   381 CRSVNIMQP-----FSSKRVEGVGNSTVALLVRHRPGQAYITPNKPVVHVGNGVTLTCSA--NPP 438
            ...:..:||     ::......:|.|..:|.......:..|:|:|.||. |..|||:|.:  ||.
  Rat   476 RLEIRDLQPADSGEYTCSATNSLGKSMSSLDFHANVARLLISPSKEVVE-GQAVTLSCRSGLNPA 539

  Fly   439 GWPVPQYRWFRD----MDGDIGNTQKILAQGPQYSIPKAHLGSEGKYHCHA-VNELGIGKIATII 498
              |..::.|:.:    ::|...|          :.:|.|.....|.|:|.| ......|.....:
  Rat   540 --PDTRFSWYLNGALLLEGSSSN----------FLLPAASSTDSGSYYCRARAGPHTSGPSLPTV 592

  Fly   499 LEVHQPPQ---FLAKLQQHMTRRVGDVD---YAVTCSAKGKPTPQIRWIKDGTEILPTRKMFDIR 557
            |.|..||:   |.|:|....:   ||.|   ..:.|.....|..|::.:..| .::.|       
  Rat   593 LTVFYPPRKLTFTARLDLDTS---GDGDGRRGILLCQVDSDPPAQLQLLHKG-HVVAT------- 646

  Fly   558 TTPTDAGGGVVAVQSILRFRGKARPNGNQL-------LPNDRGLYTCLYENDVNSANSSMHLRIE 615
            :.|:..|       |..| |.|.....|.|       :..|.|:|.|...|.:.:::.|.....:
  Rat   647 SLPSMCG-------SCSR-RMKVSRASNSLQVEIQKPVLEDEGMYLCEASNTLGNSSVSASFNAK 703

  Fly   616 HEPIVIHQYNKVAYDLRESAE--VVCRVQ---AYPKPEFQWQYGNNPSPLTMSSDGHYEISTRME 675
            ...:||...:    .|.|..|  :.|.|.   |.....|.|                      ..
  Rat   704 ATVVVITPSD----TLLEGTEASLTCNVTQEVAVSPANFSW----------------------FR 742

  Fly   676 NNDVYT----SILRIAHLQHSDYGEYICRAVNPLDS-IRAPIRLQPKGSPEKPTNLKILEVGHNY 735
            |..::|    ..:|:..|..:|...|.||.:....: :.||:.|..:.:|:.|....:|:||..:
  Rat   743 NGVLWTQGPLETVRLQPLARTDAAVYACRLLTDDGAQLSAPVVLSVQYAPDPPKLSALLDVGQGH 807

  Fly   736 -AVLNWTPG---------FNGGFMSTKYL----VSYRRV---ATP-------REQTLSDCSGNGY 776
             ||...|..         |.|..:....|    :|:.|:   ||.       ||..|.| |||.:
  Rat   808 MAVFICTVDSYPLAHLSLFRGERLLATSLEPQRLSHGRIQAKATANSLQLEVRELGLED-SGNYH 871

  Fly   777 IPSYQISSSSSNS-----NHEWIEFNCFKE--------NPCKL----------------APLDQH 812
            ..:..:..|:::|     ...|::.:...|        ..|::                .||.:.
  Rat   872 CEATNVLGSANSSLFFQVRGAWVQVSPSPELREGQAVVLSCQVPTGVPEGTSYRWFQDGRPLQES 936

  Fly   813 QSYMFKVYALNSKGTSGYSNEILA-TTKVSKIPPP--LHVSYDPNSHV 857
            .|.:.::.|::.:....|..:..| .|..:.:..|  |||||.|. ||
  Rat   937 TSSILRIAAISLRQAGAYHCQAQAPDTAAASLAAPVSLHVSYTPR-HV 983

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 29..126 CDD:299845 17/106 (16%)
IG_like 141..228 CDD:214653 16/87 (18%)
Ig 147..228 CDD:299845 16/81 (20%)
I-set 232..313 CDD:254352 18/82 (22%)
IGc2 250..302 CDD:197706 12/53 (23%)
IG_like 323..385 CDD:214653 15/71 (21%)
IGc2 330..385 CDD:197706 14/64 (22%)
Ig_2 416..501 CDD:290606 24/91 (26%)
IG_like 418..501 CDD:214653 23/89 (26%)
I-set 505..612 CDD:254352 26/119 (22%)
Ig 526..611 CDD:143165 19/91 (21%)
IG_like 633..715 CDD:214653 17/91 (19%)
Ig 635..713 CDD:143165 16/87 (18%)
FN3 720..838 CDD:238020 33/171 (19%)
Siglec1XP_017447235.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D35531at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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