DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fred and syg-1

DIOPT Version :9

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_001123159.1 Gene:syg-1 / 180555 WormBaseID:WBGene00006365 Length:730 Species:Caenorhabditis elegans


Alignment Length:689 Identity:156/689 - (22%)
Similarity:245/689 - (35%) Gaps:160/689 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 GVDLVLKCRFTEHYDSTDFTFYWARWTCCPTLFENVAIG---DVQL--NSNYRLDFRPSRGIYDL 89
            |...:|.|| .||....      .:|     :.::..:|   |..|  |..||:....:.|.|:|
 Worm    37 GETAILTCR-VEHQQGP------VQW-----MKDDFGLGTDRDKPLPGNKRYRMVGSAANGEYNL 89

  Fly    90 QIKN-TSYNRDNGRFECRIKAKGTGADVHQEFYNLTVLTAPHPPMVTPGNLAV-ATEEKPLELTC 152
            :|.| |.::.|:  |.|:|........|......||||..|.||.:...:.:: |....|:..:|
 Worm    90 EISNVTLFDDDD--FACQISESDHAKAVVSSKAKLTV
LVRPTPPKIVKSHHSLKAIAGDPITQSC 152

  Fly   153 SSIGGSPDPMITWYREGSTVPLQSYALKGGSKNHY-----------------TNATLQI------ 194
            .|..|.|.|.|.|............:..|.|::.:                 .|.|.|:      
 Worm   153 LSRKGKPPPTIGWAIASDEHGKHIVSWLGESRSKFGGIHAKPEISQETVIAHVNETTQVEEGGNN 217

  Fly   195 ----------------VPRRADDGAKYKCVVWNRAMPEGHMLET-SVTLNVNYYPRVEVGPQNPL 242
                            :||..||.....|:..:...|  :.:|. ||.|::.|.|::.:...:.|
 Worm   218 SREDSSIYSIMSNLSFIPRPEDDHKYLICISQHMTFP--NKIEVDSVKLS
LRYAPQINLTVASKL 280

  Fly   243 KVERDHVAKLDCRVDAKPMVSNVR--WSRNGQYVSATP---THTIYRVNRHHAGKYTCSADNGLG 302
            .:..:..|.|.|.|:|||: .||:  |.:..|.:..|.   |....::..|:...: |.|.|.:|
 Worm   281 PLRENGSALLACNVNAKPL-DNVKISWYKGNQKLRETGDTLTFETLKMEDHNRDIF-CEATNEIG 343

  Fly   303 KTGEKDIVLDVLYPPIVFIESKTHEAEEGETVLIRCNVTANPSPINVEWLKEGAPDFRYTGELLT 367
            .| ...|.|:|.:...:...|:..|..||:.....|...|||:|. :.|.:..:.:....||.||
 Worm   344 TT-RGSIKLNV
AFGARIMSTSQDKEVNEGDNAFFHCATLANPAPA-IFWTRGDSDEIIGHGENLT 406

  Fly   368 LGSVRAEHAGNYICRSVNIMQPFSSKRVEGVGNSTVALLVRHRPGQAYITPNKPVVHVGNGVTLT 432
            |.:||....|||.|.:.          |||.....::..:..|........::....:.....:.
 Worm   407 LENVRTWQQGNYNCTAT----------VEGFRKQILSHYLHI
RGPPTVSMKDEVSASLDEATEII 461

  Fly   433 CSANPPGWP-VPQYRWFRDMDG-DIG-NTQKILAQGPQYSIPKAHLGSE-------------GKY 481
            |..:  |.| ....||  .::| :|. |..:|...  ||  ||.: |.|             |.|
 Worm   462 CEIS--GRPKTNNVRW--TVNGKEINFNNGRITVH--QY--PKPY-GKESILKIKDLKEEDFGVY 517

  Fly   482 HCHAVNELGIGKIATII--------------------LEVHQPPQFLAKL-----------QQHM 515
            :|.|.|.||.....|::                    |.:......|..|           :...
 Worm   518 NCSANNGLGFDNRGTLLK
KRNILDWIVITAKFDRMVALAIISAGVLLVSLLCCLCMCRSNCRSRK 582

  Fly   516 TRRVGD-VDYAVTCSA-KGKPTPQIRWIKDGTEI-LPTRKMFDIRTTPTDAGGGVVAVQSILRFR 577
            ::.:.| .|..|.|.| .|:..|::........: |.|:....|.....|.        ..|...
 Worm   583 SKFIDDQSDVTVKCEALDGQYFPEMYSSSPVDNVHLSTKDYISIPQNNPDL--------DFLGAT 639

  Fly   578 GKARPNGNQLLPNDRGLYTCLYENDVNSANSSMHLRIEH 616
            |...|.|        |||...:.   ||||..::.|.||
 Worm   640 GSFGPPG--------GLYPKCFN---NSANEYIYNRYEH 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 29..126 CDD:299845 26/101 (26%)
IG_like 141..228 CDD:214653 24/127 (19%)
Ig 147..228 CDD:299845 23/120 (19%)
I-set 232..313 CDD:254352 23/85 (27%)
IGc2 250..302 CDD:197706 17/56 (30%)
IG_like 323..385 CDD:214653 21/61 (34%)
IGc2 330..385 CDD:197706 19/54 (35%)
Ig_2 416..501 CDD:290606 24/120 (20%)
IG_like 418..501 CDD:214653 24/118 (20%)
I-set 505..612 CDD:254352 24/120 (20%)
Ig 526..611 CDD:143165 20/86 (23%)
IG_like 633..715 CDD:214653
Ig 635..713 CDD:143165
FN3 720..838 CDD:238020
syg-1NP_001123159.1 I-set 24..124 CDD:254352 25/100 (25%)
Ig 30..124 CDD:299845 25/100 (25%)
Ig <151..265 CDD:299845 21/115 (18%)
Ig_2 276..353 CDD:290606 22/79 (28%)
IG_like 283..353 CDD:214653 21/72 (29%)
IG_like 363..427 CDD:214653 23/74 (31%)
Ig_2 368..438 CDD:290606 22/80 (28%)
Ig 440..528 CDD:299845 22/96 (23%)
IG_like 450..535 CDD:214653 23/93 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 47 1.000 Domainoid score I8095
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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