DRSC/TRiP Functional Genomics Resources

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Protein Alignment fred and igcm-1

DIOPT Version :10

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_508166.1 Gene:igcm-1 / 180433 WormBaseID:WBGene00018215 Length:1073 Species:Caenorhabditis elegans


Alignment Length:1140 Identity:280/1140 - (24%)
Similarity:454/1140 - (39%) Gaps:220/1140 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KLLIIGQLWLSIGLISGDDSLDT------------REGVD-LVLKCRF-TEHYDSTDFTFYWARW 55
            :|..:..|:| :.|.:..||.|.            :||.: :|:.|.. .|::|...:...||| 
 Worm     5 RLFFLFFLFL-VQLTNSADSSDVFLKEPSSEPYFLQEGNEGIVIPCVVKPEYFDRQKYEINWAR- 67

  Fly    56 TCCPTLFENVAIGDVQLN--------SNYRLDFRPSRGIYDLQIKNTSYNRDNGRFECRIKAKGT 112
                  :.|..:..:..|        |.:.|:...:.|.|.|:|.....|...|.:.|.:    .
 Worm    68 ------YNNGQLRMITKNDKLLAKKHSRFILENDSATGNYSLRITEVEKNSVEGTYHCNV----I 122

  Fly   113 GADVHQEFYN----LTVLTAPHPPMV--TPGNLAVATEEKPLELTCSSIGGSPDPMITWYREGST 171
            |.|.....|:    :.||..|..|::  ||....:  |...:...|.|:||||.|..||.....|
 Worm   123 GTDDSDVQYSALATVVVLVPPGDPIISTTPSESVI--EGDFMTAKCVSVGGSPQPTFTWTLPNDT 185

  Fly   172 VPLQSYALKGGSKNHYTNATLQIVPRRADDGAKYKCVVWNRAMPEGHMLET-SVTLNVNYYPRVE 235
            : ..|.......::..|.:.|......:|||...:|.|.||||..|...:. |..|||.|.|.|.
 Worm   186 I-ASSAIFTTQFRDGATESLLHFRVTSSDDGKSVQCDVTNRAMLGGETKQVKSSQLNVLYKPVVF 249

  Fly   236 VGPQ---NPLKVERDHVAKLDCRVDAKPMVSNVRWSR--NGQYVSAT--PTHTIYRVNRHHAGKY 293
            |.|.   ..|.||...:..|.|...:.|...:..|..  :|:.....  |    .||:...:|.:
 Worm   250 VTPTENLTHLSVEEGELVNLTCNSASNPPAHSYEWKHIASGERYQGKIWP----IRVDSSMSGDF 310

  Fly   294 TCSADNGLGKTGEKDIVLDVLYPPIVFIESKTHEAEEGETVLIRCNVTANPSPINVEWLKEGAPD 358
            .|.:.|.||: |...:.:.|.:.|.:.: .::....|.|.:.|.|.|:|.|..|:::|:  |...
 Worm   311 ECRSTNELGE-GTAVLKMVVQHIPRINV-PESISPNEMEDIDILCEVSAVPEVIDIKWV--GPNG 371

  Fly   359 FRYTGELLTLGSVRAEHAGNYICRSVNIMQPFS-SKRVEGVGNSTVALLVRHRPGQAYITPNKPV 422
            |:..|..||:.|:....:|||.|.:.|.:..:. |...:.:|..|..:.|:.:||||.|...:..
 Worm   372 FKQNGSRLTITSISKAQSGNYTCMATNFLTVYGHSGSQQRMGTGTTIVDVKRKPGQAQIVSARQN 436

  Fly   423 VHVGNGVTLTCSANPPGWPVPQYRWFRDMDGDI----GNTQKILAQGPQYSIPKAHLGSEGKYHC 483
            |.||..:.|.|.|...|.|...|.|.....|.|    |:|:|      .:.:..|.|...|.|.|
 Worm   437 VDVGETIKLMCQAEDAGNPSASYTWASPSSGGIFGLEGHTEK------SFEVRNAQLSDNGVYSC 495

  Fly   484 HAVNELGIGKIATIILEVHQPPQFLAKLQQHMTRRVGDVDYAVTCSAKGKPTPQIRWIKDG---- 544
            .|.|:||.|||.|:::.|.:..:..:.|........|:....:.|.|:|.|:|.|:|:|||    
 Worm   496 KAYNDLGEGKIGTVMITVIEKARISSPLATERIFTSGEQGKILECEAQGYPSPVIKWLKDGRPVK 560

  Fly   545 TEILPTRKMFDIRTTPTDAGGGVVAVQSILRFRGKARPNGNQLLPNDRGLYTCLYEN--DVNSAN 607
            ..|..:....:.:..|.|.....||  |.|...|       .|..:|:|.:||:.:|  |....:
 Worm   561 QSIYASSATSESKCLPEDFCTQTVA--STLTLAG-------PLKWSDKGNFTCVADNGSDKTDKD 616

  Fly   608 SSMH--LRIEHEPIVIH----QYNKVAYDLRESAEVVCRVQAYPKPEFQWQYGNNPSPLTMSSDG 666
            ||..  :|:.|:|:.::    :.:..|.|:...|.:.|:|.|.|:|||.|.:.::          
 Worm   617 SSSWTIVRVLHKPVFLNRKFPEKSLAAADIGSQAIIRCKVSARPEPEFHWMFRDS---------- 671

  Fly   667 HYEISTRMENN----------DVYTSILRIAHLQHSDYGEYICRAVNPLDSIRAPIRLQPKGSPE 721
              |||....::          |.|..:|:|..:|.||||||:|||.|........|.|:....|.
 Worm   672 --EISENERHSFHTVGITGKPDEYEQLLQIESVQESDYGEYVCRATNGNGGDHVVIELRKTSPPA 734

  Fly   722 KPTNLKILEVGHNYAVLNWTPGFNGGFMSTKYLVSYRRVATPREQTLSDCSGNGYIPSYQISSSS 786
            .|.:|:.|....|..:|.|.|.|:||...| |::..|::    :....:..||..:....|::..
 Worm   735 LPLDLQKLSATSNSVLLGWVPQFDGGADQT-YVLETRKI----DPFTGEIDGNAPVSKLNINAVQ 794

  Fly   787 SNSNHE--WIEFNCFKENPCKLAPLDQHQSYMFKVYALNSKGTSGYSNEILATT----KVSKIPP 845
            .:...:  .:..|.|  |...|.||   .:|..::.|::.||.|.::..::|:|    :.:.:..
 Worm   795 QDQEIDGTLVSKNIF--NFTGLTPL---STYNLRIQAVSEKGESEFTPVLIASTEDVVEDANMMS 854

  Fly   846 PLHVSYDPNSHVLGINVAATCLSLIAVVESLVTRDATVPMWEIVETLTLLPSGSETTFKEAIINH 910
            |..:..|.:...:.             ||..:..||          .|||     ..|.:.|   
 Worm   855 PSRLVLDSSEQKIN-------------VEPKLPSDA----------CTLL-----YVFLDGI--- 888

  Fly   911 VSRPAHYTTAT--TSGRSLGVGGGSHLGEDRTMALAETAGPGPVVRVKLCLRSNHEHCGAYANAE 973
                  :.|:|  ||...:|                 ...||...|.:.|..:|...|     :.
 Worm   889 ------WRTSTCHTSSNPIG-----------------NIIPGREYRARFCTTANGLKC-----SP 925

  Fly   974 IGKSYMPHKSSMTTSALVAIIIASLSFVVFLGL-----LYAFCHCRRKHAAKKESSSVGGGVGGG 1033
            :.|:.    ||.:.|.....:.....|.:|:||     ....|..|......|.|..:       
 Worm   926 VSKTI----SSGSGSVWKTNVFFPFLFFIFIGLAICVFFLVCCKTRSNPKTSKLSPII------- 979

  Fly  1034 NANATANPGSTGAKEYDLDLDASRRPSLSQDPQQS 1068
               .|:.||           |..:||:..::|:.:
 Worm   980 ---LTSLPG-----------DELKRPADYEEPKHA 1000

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 132..228 CDD:472250 29/98 (30%)
Ig strand B 148..152 CDD:409353 0/3 (0%)
Ig strand C 162..166 CDD:409353 1/3 (33%)
Ig strand E 190..194 CDD:409353 1/3 (33%)
Ig strand F 204..209 CDD:409353 1/4 (25%)
Ig strand G 221..224 CDD:409353 0/3 (0%)
Ig 238..313 CDD:472250 18/81 (22%)
Ig strand B 250..254 CDD:409353 1/3 (33%)
Ig strand C 264..268 CDD:409353 0/3 (0%)
Ig strand E 278..282 CDD:409353 1/3 (33%)
Ig strand F 292..297 CDD:409353 1/4 (25%)
Ig strand G 306..309 CDD:409353 0/2 (0%)
Ig_3 316..385 CDD:464046 20/68 (29%)
Ig_2 416..501 CDD:464026 29/88 (33%)
Ig 523..614 CDD:472250 27/98 (28%)
Ig strand B 524..528 CDD:409568 0/3 (0%)
Ig strand C 537..541 CDD:409568 1/3 (33%)
Ig strand E 566..570 CDD:409568 1/3 (33%)
Ig strand F 594..599 CDD:409568 2/4 (50%)
Ig strand G 607..610 CDD:409568 1/2 (50%)
Ig_3 618..703 CDD:464046 29/98 (30%)
FN3 720..838 CDD:238020 29/119 (24%)
igcm-1NP_508166.1 Ig 140..235 CDD:472250 29/97 (30%)
Ig strand B 162..166 CDD:409418 0/3 (0%)
Ig strand C 176..181 CDD:409418 2/4 (50%)
Ig strand E 203..207 CDD:409418 1/3 (33%)
Ig strand F 217..222 CDD:409418 1/4 (25%)
Ig strand G 231..234 CDD:409418 0/2 (0%)
Ig_3 245..316 CDD:464046 17/74 (23%)
Ig_3 333..398 CDD:464046 20/67 (30%)
IG_like 437..513 CDD:214653 28/81 (35%)
Ig strand B 443..447 CDD:409353 1/3 (33%)
Ig strand C 458..461 CDD:409353 1/2 (50%)
Ig strand E 478..482 CDD:409353 1/9 (11%)
Ig strand F 492..497 CDD:409353 2/4 (50%)
Ig 538..617 CDD:409353 25/87 (29%)
Ig strand C 549..553 CDD:409353 1/3 (33%)
Ig strand E 586..590 CDD:409353 2/3 (67%)
Ig strand F 601..606 CDD:409353 2/4 (50%)
Ig 642..727 CDD:472250 30/96 (31%)
Ig strand B 650..654 CDD:409353 1/3 (33%)
Ig strand C 663..667 CDD:409353 2/3 (67%)
Ig strand E 688..699 CDD:409353 3/10 (30%)
Ig strand F 709..714 CDD:409353 3/4 (75%)
FN3 733..843 CDD:238020 29/119 (24%)

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