DRSC/TRiP Functional Genomics Resources

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Protein Alignment fred and LOC1278969

DIOPT Version :10

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:XP_061512275.1 Gene:LOC1278969 / 1278969 VectorBaseID:AGAMI1_012658 Length:898 Species:Anopheles gambiae


Alignment Length:905 Identity:185/905 - (20%)
Similarity:286/905 - (31%) Gaps:318/905 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LW----LSIGLISGDD----------SLDTREGVDLVLKCRFT----EHY------DSTDFTFYW 52
            ||    |.|.||.|..          |::..||..:.|.|..|    :.|      |:.....|.
Mosquito    10 LWWKLVLIINLIDGKSMHEKDKHDVFSVEGVEGRSVELHCPITVPLSQVYMVLWFKDNAGIPLYS 74

  Fly    53 -----------ARWTCCPTLFENVAIGDVQLNSNYRLDFRPSRGIYDLQIKNTSYNRDNGRFECR 106
                       |.|: .|.:|.:        .:.:.:|..|:    .|.|||.. ..|.|.:.||
Mosquito    75 VDVRDKISRQPAHWS-APEVFGS--------RAKFNIDKSPA----SLLIKNLK-RHDQGVYRCR 125

  Fly   107 IKAKGTGADVHQEFYNLTVLTAPHPPMVTP--GNLAVATEEKPLE------LTCSSIGGSPDPMI 163
            |..:......::  |||:|:..|..|:|..  |.....|:..|.|      :||...||.|.|.:
Mosquito   126 IDFRTIQTQTYR--YNLSVIVLPEQPVVLDRWGRHLNGTKLGPKEEGDDVVITCRVSGGRPQPEV 188

  Fly   164 TWYREGSTVPLQSYALKGGS--KNHYTNATLQIVPRRADDGAKYKCVVWNRAMPEGHMLETSVTL 226
            .|...|..|..| |....|.  :|.....|:|    |:|..|.:.|...|..:.|..  |||..|
Mosquito   189 RWLINGVIVDDQ-YEQNSGDVIENRLLWPTIQ----RSDLNAIFTCQTMNTKLVEPK--ETSYVL 246

  Fly   227 NVNYYPRVEVGPQNPLKVERDHVAKLDCRVDAKPMVSNVRWSRNGQYVSATPTHTI--------- 282
            :::..|........|..:..|...::.|:.......:.:.|.:..:.:..|...|:         
Mosquito   247 DMHLKPLTIKVINPPATLVADKRYEIVCQSTGSRPNAIITWYKGKRQMRRTRDETVDHNTTTSTL 311

  Fly   283 -YRVNRHHAGK-YTCSAD----NGLGKTGEKDIVLDVLYPPIVFIE----SKTHEAEEGETVLIR 337
             :.......|| .||.|:    |||..  |.|..::|:|||:|.|:    ....:.:||:.|...
Mosquito   312 SFAPTTEDDGKTLTCRAENPNVNGLFL--ETDWKMNVVYPPMVTIQLGPTLVVDDIKEGDDVYFE 374

  Fly   338 CNVTANPSPINVEWLKEGAPDFRYTGELLTLGSVRAEHAGNYICRSVNIMQPFSSKRVEGVGNST 402
            |:|.|||....::|.....                             ::|...|.|:...|.|.
Mosquito   375 CHVRANPDWKRLQWFHNDV-----------------------------LLQYNGSARIIQSGQSL 410

  Fly   403 VALLVRHRPGQAYITPNKPVVHVGNGVTLTCSANPPGWPVPQYRWFRDMDGDIGNTQKILAQGPQ 467
            |                                                      .||:..|   
Mosquito   411 V------------------------------------------------------LQKVTKQ--- 418

  Fly   468 YSIPKAHLGSEGKYHCHAVNELGIGKIATIILEVHQPPQFLAKLQQHMTRRVGDVDYAVTCSAKG 532
                     |.|.|.|.|:|..|    .|:            ..|||:.     |.:...|:   
Mosquito   419 ---------SAGYYACSAINAEG----ETV------------SDQQHLR-----VKHVPVCA--- 450

  Fly   533 KPTPQIRWIKDGTEILPTRKMFDIRTTPTDAGGGVVAVQSILRFRGKARPNGNQLLPNDRGLYTC 597
                                        |:..||             ..|.||            
Mosquito   451 ----------------------------TERHGG-------------NAPGGN------------ 462

  Fly   598 LYENDVNSANSSMHLRIEHEPIVIHQYNKVAYDLRESAEVVCRVQAYPKP-EFQWQYGNNPSPLT 661
              ..|.:.:|.:..|              :.....|:.|:.|.:.|.|.. .|.|::.|:...|.
Mosquito   463 --GTDPSGSNRNAIL--------------IGASRNENVEIPCHIFADPPARSFHWRFNNSAEILP 511

  Fly   662 MSSDGHYEISTRMENNDVYTSILRIAHLQHSDYGEYICRAVNPLDSIRAP--IRLQPKGSPEKPT 724
            :  |.|...|   :.|   .|||..|.:...|:|...|.|||.:.....|  .:|.....|...:
Mosquito   512 V--DAHRYTS---QGN---ISILNYAPVTDQDFGTLTCWAVNEVGPQSQPCTFQLVLADLPSPVS 568

  Fly   725 NLKILEVGHNYAVLNWTPGFNGGF--MSTKYLVSYRRVATPREQTLSDCSGNGYIPSYQISSSSS 787
            |..:......:|.:..|||::||.  :....||| :|..|.|                   .:.|
Mosquito   569 NCSLPNRTQQFAEIQCTPGYDGGLPQVFVLELVS-KRTGTRR-------------------FNFS 613

  Fly   788 NSNHEWIEFNCFKENPCKLAPLD--QHQSYMFKVYALNSKGTSGYSNEILATTKVSKIPP 845
            |.|..:...:..:    ||:.|.  ::.|....|||:|.||.|  :..::...::.:|.|
Mosquito   614 NKNEPFFVLDRLE----KLSALMTLENNSLSCVVYAINQKGRS--TPVLIQDFEIGRIQP 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 132..228 CDD:472250 31/105 (30%)
Ig strand B 148..152 CDD:409353 1/9 (11%)
Ig strand C 162..166 CDD:409353 0/3 (0%)
Ig strand E 190..194 CDD:409353 1/3 (33%)
Ig strand F 204..209 CDD:409353 1/4 (25%)
Ig strand G 221..224 CDD:409353 2/2 (100%)
Ig 238..313 CDD:472250 16/89 (18%)
Ig strand B 250..254 CDD:409353 0/3 (0%)
Ig strand C 264..268 CDD:409353 0/3 (0%)
Ig strand E 278..282 CDD:409353 0/3 (0%)
Ig strand F 292..297 CDD:409353 3/5 (60%)
Ig strand G 306..309 CDD:409353 1/2 (50%)
Ig_3 316..385 CDD:464046 13/72 (18%)
Ig_2 416..501 CDD:464026 11/84 (13%)
Ig 523..614 CDD:472250 10/90 (11%)
Ig strand B 524..528 CDD:409568 0/3 (0%)
Ig strand C 537..541 CDD:409568 0/3 (0%)
Ig strand E 566..570 CDD:409568 1/3 (33%)
Ig strand F 594..599 CDD:409568 0/4 (0%)
Ig strand G 607..610 CDD:409568 1/2 (50%)
Ig_3 618..703 CDD:464046 21/85 (25%)
FN3 720..838 CDD:238020 28/121 (23%)
LOC1278969XP_061512275.1 None

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