DRSC/TRiP Functional Genomics Resources

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Protein Alignment fred and Alcam

DIOPT Version :10

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:NP_033785.1 Gene:Alcam / 11658 MGIID:1313266 Length:583 Species:Mus musculus


Alignment Length:595 Identity:134/595 - (22%)
Similarity:212/595 - (35%) Gaps:166/595 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 RPSRGIYDLQIKNTSYNRDNGRFECRIKAKGTGADVHQEFYNLTVLTAPHPPMVTPGNLAVA--T 143
            ||..|.|.:   |::|. |.....||:       ||                   |.||...  .
Mouse    23 RPGLGWYTV---NSAYG-DTIVMPCRL-------DV-------------------PQNLMFGKWK 57

  Fly   144 EEKPLELTCSSIGGSPDPMITWYREGSTVPLQ-----SYALKGGSKNHYTNATLQIVPRRADDGA 203
            .|||        .||  |:...:|..:...:|     .|..:.....:|   ||.|...:..|..
Mouse    58 YEKP--------DGS--PVFIAFRSSTKKSVQYDDVPEYKDRLSLSENY---TLSIANAKISDEK 109

  Fly   204 KYKCVVWNRAMPEGHMLETSVTLNVNYYP-RVEVGPQNPLKVERDHVAKL-DC-RVDAKPMVSNV 265
            ::.|::    :.|.::.|....:.|...| :.|:..:.|. :|.|.:.|| || ..|:.| ..|:
Mouse   110 RFVCML----VTEDNVFEAPTLVKVFKQPSKPEIVNKAPF-LETDQLKKLGDCISRDSYP-DGNI 168

  Fly   266 RWSRNGQYVS----------------ATPTHTI-----YRVNRHHAG-KYTCSADNGLGKTGEKD 308
            .|.|||:.:.                .|..:|:     |:..|.... .:|||. ...|.:|:|.
Mouse   169 TWYRNGKVLQPVEGEVAILFKKEIDPGTQLYTVTSSLEYKTTRSDIQMPFTCSV-TYYGPSGQKT 232

  Fly   309 I-----VLDVLYPP---IVFIESKTHEAEEGETVLIRCNVTANPSPINVEWLKEGAPDFRYTGEL 365
            |     :.|:.||.   .:.:....:..:||:.:.::|....||.|....:...|.|:...:...
Mouse   233 IYSEQEIFDIYYPTEQVTIQVLPPKNAIKEGDNITLQCLGNGNPPPEEFMFYLPGQPEGIRSSNT 297

  Fly   366 LTLGSVRAEHAGNYICRSVNIMQPFSSKRVEGVGNSTVALLVRHRPGQAYITPNKPVV-HVGNGV 429
            .||..||....|:|.|..::.....:|..:      ||..|      ...:.|:..|. .:|:.:
Mouse   298 YTLTDVRRNATGDYKCSLIDKRNMAASTTI------TVHYL------DLSLNPSGEVTKQIGDTL 350

  Fly   430 TLTC--SANPPGWPVPQYRWFRDMDGDIGNTQKILAQGPQYSIPKAHLGSEGKYHCH-AVNEL-G 490
            .::|  ||:.....|    |.:|      |.:  |...|.:|  ..|....|.|.|. |:.|: |
Mouse   351 PVSCTISASRNATVV----WMKD------NIR--LRSSPSFS--SLHYQDAGNYVCETALQEVEG 401

  Fly   491 IGKIATIILEVHQPPQFLAKLQQHMTRRV--GDVDYAVTCSAKGKPTPQIRWIKDGTEILPTRKM 553
            :.|..::.|.|...||.      .||::.  ..:...:.|..:|.|.|.|.|             
Mouse   402 LKKRESLTLIVEGKPQI------KMTKKTDPSGLSKTIICHVEGFPKPAIHW------------- 447

  Fly   554 FDIRTTPTDAGGGVVAVQSILRFRGKARP--NGNQ-----LLPNDRGLYTCLYEND----VNSAN 607
                   |..|.|.|..|:      :..|  ||..     :.|.:....||..||.    |||.|
Mouse   448 -------TITGSGSVINQT------EESPYINGRYYSKIIISPEENVTLTCTAENQLERTVNSLN 499

  Fly   608 SSMHLRIEHE 617
            .|.....||:
Mouse   500 VSAISIPEHD 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 132..228 CDD:472250 20/102 (20%)
Ig strand B 148..152 CDD:409353 0/3 (0%)
Ig strand C 162..166 CDD:409353 0/3 (0%)
Ig strand E 190..194 CDD:409353 2/3 (67%)
Ig strand F 204..209 CDD:409353 1/4 (25%)
Ig strand G 221..224 CDD:409353 1/2 (50%)
Ig 238..313 CDD:472250 25/103 (24%)
Ig strand B 250..254 CDD:409353 2/4 (50%)
Ig strand C 264..268 CDD:409353 1/3 (33%)
Ig strand E 278..282 CDD:409353 0/3 (0%)
Ig strand F 292..297 CDD:409353 2/4 (50%)
Ig strand G 306..309 CDD:409353 1/2 (50%)
Ig_3 316..385 CDD:464046 16/71 (23%)
Ig_2 416..501 CDD:464026 22/89 (25%)
Ig 523..614 CDD:472250 24/101 (24%)
Ig strand B 524..528 CDD:409568 0/3 (0%)
Ig strand C 537..541 CDD:409568 1/3 (33%)
Ig strand E 566..570 CDD:409568 2/3 (67%)
Ig strand F 594..599 CDD:409568 2/4 (50%)
Ig strand G 607..610 CDD:409568 1/2 (50%)
Ig_3 618..703 CDD:464046 134/595 (23%)
FN3 720..838 CDD:238020
AlcamNP_033785.1 Ig 29..117 CDD:472250 26/134 (19%)
Ig strand B 39..43 CDD:409329 0/3 (0%)
Ig strand C 55..59 CDD:409329 0/3 (0%)
Ig strand E 96..100 CDD:409329 3/6 (50%)
Ig strand F 110..115 CDD:409329 1/4 (25%)
C2-set_2 137..231 CDD:400489 24/96 (25%)
Ig strand B 151..157 CDD:409353 2/5 (40%)
Ig strand C 167..171 CDD:409353 1/3 (33%)
Ig strand E 203..207 CDD:409353 0/3 (0%)
Ig strand F 217..222 CDD:409353 2/4 (50%)
IG_like 255..329 CDD:214653 16/79 (20%)
Ig strand B 266..270 CDD:409353 0/3 (0%)
Ig strand E 296..300 CDD:409353 0/3 (0%)
Ig strand F 310..315 CDD:409353 2/4 (50%)
IG_like 339..393 CDD:214653 15/67 (22%)
Ig_3 415..489 CDD:464046 21/105 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 562..583
Blue background indicates that the domain is not in the aligned region.

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