DRSC/TRiP Functional Genomics Resources

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Protein Alignment fred and LOC110439716

DIOPT Version :9

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:XP_021331569.1 Gene:LOC110439716 / 110439716 -ID:- Length:325 Species:Danio rerio


Alignment Length:360 Identity:78/360 - (21%)
Similarity:118/360 - (32%) Gaps:126/360 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LSIGLISGDD--------SLDTREGVDLVLKCRFTEHYDSTDFTFYWARWTCCPTL----FENVA 66
            |.|..:||.|        .:...:...:::.|.||.   .|........||..|..    |.:::
Zfish    17 LMIHRVSGADWGVKYSTSHICALKDSSVIMSCTFTY---PTGHQIMKVFWTKNPVKNSEEFSDLS 78

  Fly    67 -----------IGDVQLNSNYRLDFRPSRGIYDLQIKNTSYNRDNGRFECRIKAKGTGADVHQEF 120
                       :||.|.|...||                              :..|..|.|:.:
Zfish    79 EDPEYSQRLQYLGDKQQNCTVRL------------------------------SHVTKKDEHEYY 113

  Fly   121 Y------------------NLTVLTAPHPPMVTPGNLAVATEEKPLELTCSSIGGSPD-PMITWY 166
            :                  ::|.|....|..||.|:        .:.|||:|.....| |...||
Zfish   114 FRIITDKDWMWVGKPGVRLSVTDLQLESPERVTEGD--------SVRLTCNSSCKLTDTPTFIWY 170

  Fly   167 REGSTVPLQSYALKGGSKNHYTNATLQIVPRRADDGAKYKCVVWNRAMPEGHMLET-SVTLNVNY 230
            |...|:|.::           |...|.::..|.|.| :|:|.|.      ||.|.: .|.|||.|
Zfish   171 RNSHTLPKRT-----------TGNKLILISFREDAG-RYRCAVL------GHTLTSPEVYLNVTY 217

  Fly   231 YPR---VEVGPQNPLKVERDHVAKLDCRVDAKPMVSNVRWSR--------NGQYVSATPTHTIYR 284
            .|:   |.:.....:.|| |.|: |.|..|:.|...|..|..        :||..||.       
Zfish   218 APKSVSVSINGSAVIMVE-DSVS-LMCISDSNPPALNFSWFEENQSSAVGSGQSFSAV------- 273

  Fly   285 VNRHHAGKYTCSADNGLGKTGEKDIVLDVLYPPIV 319
                .:|::.|.|.|..|......:.:.|...|::
Zfish   274 ----QSGRFYCEAHNPHGAQRSDAVTVTVKGRPLI 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 29..126 CDD:299845 18/129 (14%)
IG_like 141..228 CDD:214653 24/88 (27%)
Ig 147..228 CDD:299845 24/82 (29%)
I-set 232..313 CDD:254352 21/91 (23%)
IGc2 250..302 CDD:197706 14/59 (24%)
IG_like 323..385 CDD:214653
IGc2 330..385 CDD:197706
Ig_2 416..501 CDD:290606
IG_like 418..501 CDD:214653
I-set 505..612 CDD:254352
Ig 526..611 CDD:143165
IG_like 633..715 CDD:214653
Ig 635..713 CDD:143165
FN3 720..838 CDD:238020
LOC110439716XP_021331569.1 V-set 43..135 CDD:311561 17/124 (14%)
Ig_3 141..199 CDD:316449 21/77 (27%)
Ig_2 229..298 CDD:316418 19/81 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D35531at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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