DRSC/TRiP Functional Genomics Resources

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Protein Alignment fred and LOC108648322

DIOPT Version :10

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:XP_017952078.1 Gene:LOC108648322 / 108648322 XenbaseID:XB-GENE-29091151 Length:623 Species:Xenopus tropicalis


Alignment Length:632 Identity:136/632 - (21%)
Similarity:220/632 - (34%) Gaps:197/632 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 QIKNTSYN---RDNGRFECRIKAKGTGADVHQEFYNLTV----LTAPHPPMVTPGNLAVATEEKP 147
            |.|.|.:|   .|:|.::|:..:......|     .||:    |:...||.|..|:        .
 Frog    69 QQKYTIFNAKKSDSGVYQCKSHSSDRSDSV-----TLTISDDYLSLKVPPFVFEGD--------N 120

  Fly   148 LELTCSSIGGSPDPMITWYREGSTVPLQSYALKGGSKN---HYTNATLQIVPRRADDGAKYKCVV 209
            |:::|:...|        |:..:....:...|.|.|.:   ::...|:      |..|: |.|. 
 Frog   121 LQVSCAGYPG--------YKADTAKLNKGNQLIGSSPSGNFNFGRVTM------ATSGS-YICY- 169

  Fly   210 WNRAMPEGHML----ETSVTLNVNYYPRVEVGPQNPLKVERDHVAKLD-----CRVDAKPMVSNV 265
              ||: :.|::    ::||.::|.     |:.....:||..|.|.:.|     |..:..|.....
 Frog   170 --RAV-KHHLIYYNQKSSVYISVK-----ELFSSPQIKVSTDQVTEGDRMTITCDTELSPHRETT 226

  Fly   266 R----WSRNGQYVSATPTHTIYRVNR---HHAGKYTCS--ADNGL--GKTGEKDIVLDV--LYPP 317
            .    :.|||..|........|.|:.   ..:|.|||.  |.:|:  .|:..|.|.:..  |...
 Frog   227 ELQFAFYRNGHNVQGFSLSNQYGVSSAQLEDSGYYTCEIRAQSGIVNKKSDRKSIQIRTKKLAGV 291

  Fly   318 IVFIESKTHEAEEGETVLIRCNVTANPSPINVEWLKE----------GAPDFRYTGELLTLGSVR 372
            .|.:|....:...||.:.|.|:|......:...|.|:          .||:.|:..|     ||.
 Frog   292 RVRLEPAGGQVIAGEKLEILCSVEKGMGLLRYSWCKQPTLICNTKEAAAPEQRFVAE-----SVS 351

  Fly   373 AEHAGNYICRSVNIMQPFSSKRVEGVGNSTVALLVRHRPGQAYITPNKP--VVHVGNGVTLTCS- 434
            .::.|.|.|....      :...|.:.::.:::.|:.....|.|||.:.  .|.|.:.:.|||| 
 Frog   352 EDYGGEYQCIITR------TATGESIRSANISISVQEPVADARITPEEDELAVKVEDNLCLTCSV 410

  Fly   435 ---ANPPGWPVPQYRWFRDMDGDIGNTQKILAQ----GPQYSIPKAHLGSEGKYHCHAVNELGIG 492
               .|      |.:.|..: :..||: :.:|.|    |....|..|.|...|.|.|...|:|...
 Frog   411 AKGTN------PLFLWIHN-NKTIGH-ESVLYQVRESGKVLCIESAQLQHAGTYWCEVRNQLSSN 467

  Fly   493 KIATIILEVHQPPQFLAKLQQHMTRRVGDVDYAVTCSAKGKPTPQIRWIKDGTEI-------LPT 550
            :|.|:...:                        ||.|..|.   ..|::..|..|       :..
 Frog   468 RIFTVTSNI------------------------VTISISGN---TYRYVVMGIGISLASLLLVTA 505

  Fly   551 RKMFDIRTT----------PTDAGGGVVAVQSILRFRGKARPNG--------NQLLPND------ 591
            ..:|..|:|          ||.:||.|...|           ||        |..:|||      
 Frog   506 IVVFKYRSTMASCFTCCHFPTSSGGSVTKDQ-----------NGSDPRQQVANLYIPNDGKPEEE 559

  Fly   592 ----------RGLYTCLYENDVNSANSSMHLRIEHEPIVIHQYNKVA 628
                      .|...|.|.|...:|:|          :..:.|:||:
 Frog   560 QPEYGNIVIQDGEDECYYMNYDPTASS----------LPKNNYDKVS 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 132..228 CDD:472250 20/102 (20%)
Ig strand B 148..152 CDD:409353 1/3 (33%)
Ig strand C 162..166 CDD:409353 0/3 (0%)
Ig strand E 190..194 CDD:409353 1/3 (33%)
Ig strand F 204..209 CDD:409353 2/4 (50%)
Ig strand G 221..224 CDD:409353 0/2 (0%)
Ig 238..313 CDD:472250 22/90 (24%)
Ig strand B 250..254 CDD:409353 1/8 (13%)
Ig strand C 264..268 CDD:409353 0/7 (0%)
Ig strand E 278..282 CDD:409353 0/3 (0%)
Ig strand F 292..297 CDD:409353 3/6 (50%)
Ig strand G 306..309 CDD:409353 1/2 (50%)
Ig_3 316..385 CDD:464046 18/78 (23%)
Ig_2 416..501 CDD:464026 27/94 (29%)
Ig 523..614 CDD:472250 28/131 (21%)
Ig strand B 524..528 CDD:409568 1/3 (33%)
Ig strand C 537..541 CDD:409568 1/3 (33%)
Ig strand E 566..570 CDD:409568 1/3 (33%)
Ig strand F 594..599 CDD:409568 1/4 (25%)
Ig strand G 607..610 CDD:409568 1/2 (50%)
Ig_3 618..703 CDD:464046 3/11 (27%)
FN3 720..838 CDD:238020
LOC108648322XP_017952078.1 Ig 23..102 CDD:472250 9/37 (24%)
Ig strand B 40..44 CDD:409410
Ig strand C 55..59 CDD:409410
Ig strand E 70..74 CDD:409410 1/3 (33%)
Ig strand F 84..89 CDD:409410 1/4 (25%)
Ig strand G 95..98 CDD:409410 0/2 (0%)
Ig 200..283 CDD:472250 21/82 (26%)
Ig strand B 211..215 CDD:409411 0/3 (0%)
Ig strand C 229..233 CDD:409411 0/3 (0%)
Ig strand E 246..250 CDD:409411 1/3 (33%)
Ig strand F 260..267 CDD:409411 3/6 (50%)
Ig strand G 276..279 CDD:409411 0/2 (0%)
Ig_3 388..462 CDD:464046 23/81 (28%)
Blue background indicates that the domain is not in the aligned region.

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