DRSC/TRiP Functional Genomics Resources

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Protein Alignment fred and LOC100493237

DIOPT Version :10

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:XP_031747344.1 Gene:LOC100493237 / 100493237 XenbaseID:XB-GENE-29081607 Length:1173 Species:Xenopus tropicalis


Alignment Length:1110 Identity:228/1110 - (20%)
Similarity:390/1110 - (35%) Gaps:306/1110 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 EGVDLVLKCRFTEHYDSTDFTFYWARWTCCPTLF-ENVAIGDVQLNSN--YRLDFRPSRGIYDLQ 90
            ||..|.|:|.....|......||....|..|.:. ..:.||.|.:.::  ||.....:|.::...
 Frog   113 EGDSLSLRCHSQPAYREKKLVFYKDNETIGPPVSGSELQIGRVNVTASGTYRCGKEITRYVFSPV 177

  Fly    91 IKNTSYNRDNGRFECRIKAKGTGADVHQEFYNLTVLTAPHPP--MVTPGNLAVATEEKPLELTCS 153
            ...|::.                        |::|.....||  .|:|.:|   .|...:.:||.
 Frog   178 TPYTAHR------------------------NISVQELFSPPHINVSPYDL---IEGDHMTITCD 215

  Fly   154 S----IGGSPDPMITWYREGSTVPLQSYALKGGSKNHYTNATLQIVPRRADDGAKYKCVVWNRAM 214
            :    ...:.:....:||.|..|  |.::|    .|.|...:.|:     :|...|.|.|   ..
 Frog   216 TELRPHRETTELQFAFYRNGHNV--QGFSL----SNQYGVPSAQL-----EDSGNYTCEV---QT 266

  Fly   215 PEGHMLETS--VTLNVN---YYPRVEVGPQNPLKVERDHVAKLDCRVDAKPMVSN--VRWSR-NG 271
            |.|.:.:.|  ||:::.   ..|.:.|.|.....:..|.| .|.|. .|:|...|  ..|.| |.
 Frog   267 PTGSVRKRSSVVTIHIQGAAARPVLSVSPNWAPILTGDSV-NLTCN-GARPAQGNESYTWYRGNS 329

  Fly   272 QYVSA-TPTHTIYRVNRHHAGKYTCSADNG-------LGKTGEKDIVLDVLYPPIVFIESKTHEA 328
            |.... ..|:.|:|..|..:|:|.|..|.|       |..:.|| ::|..  ||.|         
 Frog   330 QRTGVERQTYVIHRARREQSGRYQCQIDAGDRSAAFQLTVSDEK-LILQA--PPGV--------- 382

  Fly   329 EEGETVLIRCNVTANP-----SPINVEWLKEGAPDFRYTG--ELLTLGSVRAEHAGNYICRSV-- 384
            .||:.:::||:   :|     |....|:.:|  |..|..|  .:|.||..:|..:|.|.|::.  
 Frog   383 HEGDELILRCH---HPPDYRTSDTTFEFREE--PINRSLGSDSVLPLGKAQANMSGPYRCKTKLY 442

  Fly   385 ----NIMQPFSSKRVEGVGNSTVALLVRHRPGQAYITPNKPVVHVGNGVTLTCSA--NPPGWPVP 443
                :|...::|.    |.:.:|..|  ..|.|..:.|::  |..|:.:|:||..  .|......
 Frog   443 DKFHDITHNYTSP----VEHLSVTEL--FSPPQIKVRPDQ--VTEGDHMTITCDTELRPHRETTE 499

  Fly   444 -QYRWFRDMDGDIGNTQKILAQGPQYSIPKAHLGSEGKYHCHAVNELGIGKIATIILEVH----- 502
             |..::|:     |:..:......||.:|.|.|...|||.|......|..:..:.::.:|     
 Frog   500 LQIAFYRN-----GHNVQGFNSSNQYGVPSAQLEDSGKYTCEVQTPTGSVRKRSSMVHIHIQELF 559

  Fly   503 QPPQFLAKLQQ-----HMTRRVGDVDYAVTCSAKGKPTPQIRWIKDGTEILPTRKMFDIRTTPTD 562
            ..||......|     |||         :||               |||:.|.|:..:::.....
 Frog   560 SYPQINVSSDQVTEGDHMT---------ITC---------------GTELRPHRETTELQFAFYR 600

  Fly   563 AGGGVVAVQSILRFRGKARPNGNQLLPN----DRGLYTCLYENDVNSA--NSSM-HLRIEHEPIV 620
            .|..|         :|.:..|..: :|:    |.|.|||..:....|.  .||| |:.|:.  :.
 Frog   601 NGHNV---------QGFSLSNQYE-VPSAQLEDSGNYTCEVQTPTGSVRKRSSMAHIHIQE--LF 653

  Fly   621 IHQYNKVAYDLRESAE---VVCRVQAYPKPE-----FQWQYGNNPSPLTMSSDGHYEI-STRMEN 676
            .:...||:.|.....:   :.|..:..|..|     |.: |.|..:....||...|.: |.::| 
 Frog   654 NNTQIKVSSDQVTEGDHMTITCDTKLSPHRETTELLFAF-YRNGHNVQGFSSSNQYGVPSAQLE- 716

  Fly   677 NDVYTSILRIAHLQHSDYGEYICRAVNPLDSIRAPIRLQPKGSPEKPTNLKILEVGHNYAV---- 737
                            |.|.|.|....|..|:|            |.:|:..:.:...::.    
 Frog   717 ----------------DSGNYTCEVQTPTGSVR------------KRSNVLYIHIQELFSTPQIK 753

  Fly   738 LNWTPGFNGGFMSTKYLVSYRRVATPREQTLS---DCSGNGY------------IPSYQISSSSS 787
            :...|...|..|    :::.....:|..:|..   ....||:            :||.|:..|.:
 Frog   754 VRPNPAREGDHM----IITCDTELSPHRETTELQFAFYRNGHNEQRFSLYNKYGVPSAQLEDSGN 814

  Fly   788 NSNHEWIEFNCFKENPC-----KLAPLDQHQSYMFKVYALNSKGTSGYSNEILATTKVSKIPP-- 845
                    :.|..:.|.     :.:.:..|...:|....:..:.......:.:..|..:|:.|  
 Frog   815 --------YTCEVQTPTGSVRKRSSMVHIHIQELFSTPQIKVRPDQVTQGDHMTITCDTKLRPHR 871

  Fly   846 ---PLHVSYDPNSHVLGINVAATCLSLIAVVESLVTRDATVPMWEIVETLTLLPSGSETTFKEAI 907
               .|..::..|.|    ||....||....|.|....|:.....| |:|    |:||  ..|.:.
 Frog   872 ETTELQFAFYRNGH----NVQGFSLSNQYGVPSAQLEDSGNYTCE-VQT----PTGS--VRKRSK 925

  Fly   908 INHV--------------SRPAHYTTA----------------TTSGRSLGVGGGSHLGEDRTMA 942
            ::|:              ..|.:...:                |.:..::|..|.||  |.||.|
 Frog   926 VSHIEIQGAVESQDGGTTDSPPYLNKSKKEAASGDAKSAKRIPTQTNETMGDPGASH--EGRTNA 988

  Fly   943 LA----------ETAGPGPVVRVKLCLRSNHEHCGAYANAEIGKSYMPHKSSMTTSALVAIIIAS 997
            ..          :|..||      ..|.|..:...:..:.::|:....:.:.....:::|:::.:
 Frog   989 TGVSSQMRETKEDTEQPG------ASLPSRGKETSSQLHFQLGERSQMYLALGLIGSVLALLVVA 1047

  Fly   998 LSFVV 1002
            .:||:
 Frog  1048 AAFVI 1052

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 132..228 CDD:472250 25/103 (24%)
Ig strand B 148..152 CDD:409353 0/3 (0%)
Ig strand C 162..166 CDD:409353 0/3 (0%)
Ig strand E 190..194 CDD:409353 0/3 (0%)
Ig strand F 204..209 CDD:409353 2/4 (50%)
Ig strand G 221..224 CDD:409353 1/4 (25%)
Ig 238..313 CDD:472250 25/85 (29%)
Ig strand B 250..254 CDD:409353 1/3 (33%)
Ig strand C 264..268 CDD:409353 1/5 (20%)
Ig strand E 278..282 CDD:409353 1/3 (33%)
Ig strand F 292..297 CDD:409353 2/4 (50%)
Ig strand G 306..309 CDD:409353 2/2 (100%)
Ig_3 316..385 CDD:464046 21/81 (26%)
Ig_2 416..501 CDD:464026 20/87 (23%)
Ig 523..614 CDD:472250 22/97 (23%)
Ig strand B 524..528 CDD:409568 0/3 (0%)
Ig strand C 537..541 CDD:409568 0/3 (0%)
Ig strand E 566..570 CDD:409568 1/3 (33%)
Ig strand F 594..599 CDD:409568 3/4 (75%)
Ig strand G 607..610 CDD:409568 1/2 (50%)
Ig_3 618..703 CDD:464046 18/93 (19%)
FN3 720..838 CDD:238020 17/141 (12%)
LOC100493237XP_031747344.1 Ig 23..98 CDD:472250
Ig strand B 40..44 CDD:409410
Ig strand C 54..59 CDD:409410
Ig strand E 70..73 CDD:409410
Ig strand F 80..85 CDD:409410
Ig strand G 91..94 CDD:409410
Ig 103..>165 CDD:472250 14/51 (27%)
Ig strand B 117..121 CDD:409411 2/3 (67%)
Ig strand C 131..135 CDD:409411 0/3 (0%)
Ig strand E 148..152 CDD:409411 0/3 (0%)
Ig_2 195..282 CDD:464026 25/103 (24%)
Ig 289..369 CDD:472250 24/81 (30%)
Ig strand B 306..310 CDD:409410 2/4 (50%)
Ig strand C 321..325 CDD:409410 0/3 (0%)
Ig strand E 337..341 CDD:409410 1/3 (33%)
Ig strand F 351..356 CDD:409410 2/4 (50%)
Ig strand G 362..365 CDD:409410 0/2 (0%)
Ig_2 468..555 CDD:464026 21/93 (23%)
Ig_2 562..649 CDD:464026 28/120 (23%)
Ig_2 655..743 CDD:464026 23/117 (20%)
Ig_2 750..837 CDD:464026 13/98 (13%)
Ig_2 844..924 CDD:464026 20/90 (22%)
Blue background indicates that the domain is not in the aligned region.

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