DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fred and si:dkey-27j5.8

DIOPT Version :9

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:XP_021333359.1 Gene:si:dkey-27j5.8 / 100150193 ZFINID:ZDB-GENE-121214-156 Length:615 Species:Danio rerio


Alignment Length:723 Identity:154/723 - (21%)
Similarity:264/723 - (36%) Gaps:162/723 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IKLLIIGQL----WLSIGLISGDDSLDTREGVDLVLKCRFTEHYDSTDFTFYWARWTCCPTLF-- 62
            |.||||.::    |   |:......:...:...:.:.|.||  |.:|.:......|......:  
Zfish    14 IFLLIIHRVSAAGW---GVNYSPSQICALQNSTMTISCNFT--YPTTGYQIMKVFWNKDQEKYDG 73

  Fly    63 ENVA--------------IGDVQLNSNYRLDFRPSRGIYDLQIKNTSYNRDNGRFECRIKAKGTG 113
            ||.|              :||.|.|...||.....:..:|...:..: |...||.   |...|. 
Zfish    74 ENFADLSNNFEYSQRLQYLGDKQQNCTVRLSHVTKKDEHDYYFRFIT-NVTGGRL---IGIPGV- 133

  Fly   114 ADVHQEFYNLTVLTAPHPPMVTPGNLAVATEEKPLELTC-SSIGGSPDPMITWYREGSTVPLQSY 177
                  ..::|.|....|..||.|:        .:.||| ||...:..|...|||...|:     
Zfish   134 ------VLSVTDLQLESPERVTEGD--------SVRLTCRSSCKLTDTPTFIWYRNSHTL----- 179

  Fly   178 ALKGGSKNHYTNA--TLQIVPRRADDGAKYKCVVWNRAMPEGHMLETSVTLNVNYYPRVEV-GPQ 239
                      ||.  .|.|......:...|.|.|..:.     .:..:|.|||.|.|...| ..:
Zfish   180 ----------TNIGDELNISSVSRTEAGHYSCGVQGQT-----YISPAVYLNVRYAPDTPVISNR 229

  Fly   240 NPLKVERDHVAKLDCRVDAKPMVSNVRWSRNGQYVSATPTHTIYRVNRHHAGKYTCSADNGLGKT 304
            :.:.:|.|.|. |:|..|:.| .:.:.|.:...|:::.....|.:::..::|:|.|.|.|..|:.
Zfish   230 SAVIMEGDSVT-LNCSSDSNP-PAEINWYKANTYLNSGGIFNISKISSGYSGEYKCRARNDHGEK 292

  Fly   305 GEKDIVLDVLYPPIVFIESKTHEA--EEGETVLIRCNVTANPSPINVEWLKEGAPDFRYTGELLT 367
            ....:.|||.|||.....|....|  ..|::|.:.|:..:|| |..:.|.| |....| :|.:..
Zfish   293 YSDPVTLDVQYPPRNISVSMNRSAVIMSGDSVTLSCSSDSNP-PAEINWYK-GETSVR-SGRIFN 354

  Fly   368 LGSVRAEHAGNYICRSVNIMQPFSSKRVEGVGNSTVALLVRHRPGQAYITPNKPVVHVGNGVTLT 432
            :..:.::.:|.|.||..|   .:..|.     :..|.|.|::.|....::.........:.|:|.
Zfish   355 ISKISSDDSGEYKCRYKN---KYGEKY-----SDPVTLDVQYPPRSVSVSVTDSGQLFSDSVSLM 411

  Fly   433 C--SANPPGWPVPQYRWFRDMDGDIGNTQKILAQGPQYSIPKAHLGSEGKYHCHAVNELGIGKIA 495
            |  .:|||..   .:.||::      |....:..|..:|..::     |:::|.|.|..|..:..
Zfish   412 CISDSNPPAL---SFNWFKE------NQSSAVGSGQSFSAVQS-----GRFYCEAHNPHGAQRSD 462

  Fly   496 TIILEVHQPPQFLAKLQQHMTRRVGDVDYAVTCSAKGKPTPQIRWIKDGTEILPTRKMFDIRTTP 560
            .:.:.||          :|..|.:     .:|.::.|.....|..|                   
Zfish   463 AVTVTVH----------EHAERNI-----IITATSVGVLIIFIIII------------------- 493

  Fly   561 TDAGGGVVAVQSILRFRGKARPNGNQLLPNDRGLY------TCLYENDVNSANSSMHLRIEHEPI 619
                  |:.|..|::.:..|:..|..:..||  ||      |.:|:|.|  .:..:.....:|.:
Zfish   494 ------VIIVLFIIKKQRSAKSEGLIVTQND--LYSDVPQKTQVYDNPV--CDPGLADETPYETV 548

  Fly   620 VIHQYNKVAYDLRESAEVVCRVQAYPK-------PEFQWQYGNNPSPLTMSSDGHYEISTRMENN 677
                ..:::.:.|::.|:......|.|       .|.|.|..|  :|:......|.:.:......
Zfish   549 ----NPRISAECRDAEEIQYATVQYHKNTPKKKEEEEQRQCDN--TPVQQPDQDHRQENVETVEE 607

  Fly   678 DVYTSILR 685
            .|..|:|:
Zfish   608 SVIYSMLK 615

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 29..126 CDD:299845 22/112 (20%)
IG_like 141..228 CDD:214653 19/89 (21%)
Ig 147..228 CDD:299845 19/83 (23%)
I-set 232..313 CDD:254352 19/81 (23%)
IGc2 250..302 CDD:197706 12/51 (24%)
IG_like 323..385 CDD:214653 17/63 (27%)
IGc2 330..385 CDD:197706 15/54 (28%)
Ig_2 416..501 CDD:290606 16/86 (19%)
IG_like 418..501 CDD:214653 16/84 (19%)
I-set 505..612 CDD:254352 19/112 (17%)
Ig 526..611 CDD:143165 17/90 (19%)
IG_like 633..715 CDD:214653 12/60 (20%)
Ig 635..713 CDD:143165 12/58 (21%)
FN3 720..838 CDD:238020
si:dkey-27j5.8XP_021333359.1 Ig 27..118 CDD:325142 18/95 (19%)
IGc2 150..201 CDD:197706 16/73 (22%)
Ig_2 224..301 CDD:316418 18/78 (23%)
Ig_2 315..386 CDD:316418 20/81 (25%)
Ig_2 405..468 CDD:316418 16/76 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D35531at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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