DRSC/TRiP Functional Genomics Resources

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Protein Alignment fred and LOC100150177

DIOPT Version :9

Sequence 1:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster
Sequence 2:XP_017212278.1 Gene:LOC100150177 / 100150177 -ID:- Length:491 Species:Danio rerio


Alignment Length:505 Identity:107/505 - (21%)
Similarity:175/505 - (34%) Gaps:156/505 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 NATLQIVPRRA-DDGAKYKCVVWN--RAMPEGHMLETSVTLNVNYYPRVEV--GPQNPLKVERDH 248
            |:|:.|:.... .||.|.....||  :...||...:.|.  |..|..|::.  ..|....|...|
Zfish    41 NSTMTIICNYTYPDGLKVMKAFWNIDQVYYEGDFADLST--NSEYSQRLQYLGDKQENCTVRLSH 103

  Fly   249 VAKLDCRVDAKPMVSNV---RW------------------------------SRNGQYVSATPTH 280
            |.|.|..|.....|:||   :|                              .::...::.|||.
Zfish   104 VTKKDEHVYYFRFVTNVEGQKWIGIPGVRLSVTDLQLESPERVTEGDSVRLTCKSSCKLTDTPTF 168

  Fly   281 TIYR----------------VNRHHAGKYTCSADNGLGKTG-EKDIVLDVLYPPIVFIESKTHEA 328
            ..||                |:|..||.|:|...   |:|. ...:.|:|.|.|...:.|.:..|
Zfish   169 IWYRNSHILTNIGDELNIRSVSRREAGHYSCGVQ---GQTYISPAVYLNVTYAPDTPVISISGSA 230

  Fly   329 --EEGETVLIRCNVTANPSPINVEWLKEGAPDFRYTGELLTLGSVRAEHAGNYICRSVN-----I 386
              .||::|.:.|:..:|| |..:.|.| |..... :|.:..:..:.::.:|.|.|.:.|     |
Zfish   231 VIMEGDSVTLSCSSDSNP-PAQISWFK-GETSVG-SGRIFNISKISSDDSGEYKCSARNDHGEKI 292

  Fly   387 MQPFSSKRVEGVGNSTVALLVRHRP--------GQAYITPNKPVVHVGNGVTLTC--SANPPGWP 441
            ..|             |.|.|::.|        |.|.|.....:  ..:.|:|.|  .:|||.. 
Zfish   293 SDP-------------VTLDVQYPPKSISVSISGSAVIMSGDSL--FSDSVSLMCISDSNPPAL- 341

  Fly   442 VPQYRWFRDMDGDIGNTQKILAQGPQYSIPKAHLGSEGKYHCHAVNELGIGKIATIILEVHQPPQ 506
              .:.||::      |....:..|..:|..::     |:::|.|.|..|..:...:.:.|     
Zfish   342 --SFSWFKE------NQSSAVGSGQSFSAVQS-----GRFYCEAHNPHGAQRSDAVTVTV----- 388

  Fly   507 FLAKLQQHMTRRVGDVDYAVTCSAKGKPTPQIRWIKDGTEILPTRKMFDIRTTPTDAGGGVVAVQ 571
                 |||..|.:     .:|.::            .|..|:....||              |:.
Zfish   389 -----QQHAVRNI-----VITATS------------GGLFIIVVIIMF--------------AIL 417

  Fly   572 SILRFRGKARPNGNQLLPNDRGLYTCLYENDVNSANSSMH---LRIEHEP 618
            |..|.|..|..:..|.:.|:...|..|   |:.:..|:::   ..:.|.|
Zfish   418 SKRRSRRSAVKSDRQKICNESATYAGL---DLQTVTSNLYDTLTTVHHRP 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fredNP_608812.3 Ig 29..126 CDD:299845
IG_like 141..228 CDD:214653 11/41 (27%)
Ig 147..228 CDD:299845 11/41 (27%)
I-set 232..313 CDD:254352 26/132 (20%)
IGc2 250..302 CDD:197706 18/100 (18%)
IG_like 323..385 CDD:214653 16/63 (25%)
IGc2 330..385 CDD:197706 14/54 (26%)
Ig_2 416..501 CDD:290606 17/86 (20%)
IG_like 418..501 CDD:214653 16/84 (19%)
I-set 505..612 CDD:254352 20/109 (18%)
Ig 526..611 CDD:143165 16/84 (19%)
IG_like 633..715 CDD:214653
Ig 635..713 CDD:143165
FN3 720..838 CDD:238020
LOC100150177XP_017212278.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D35531at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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