DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment capu and Fhdc1

DIOPT Version :10

Sequence 1:NP_001137784.1 Gene:capu / 33611 FlyBaseID:FBgn0000256 Length:1361 Species:Drosophila melanogaster
Sequence 2:NP_001099907.1 Gene:Fhdc1 / 295161 RGDID:1311955 Length:1148 Species:Rattus norvegicus


Alignment Length:594 Identity:150/594 - (25%)
Similarity:232/594 - (39%) Gaps:135/594 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   776 KEDGEKPHAVAPPPPPPPPPLHAFVAPPPPPPPPPPPPPPLANYGAPPPPPPPPPGSGSAPPPPP 840
            ||:|....|.|.......|.    .:|.||||||||||.|.:..|.||.||         ||.||
  Rat    13 KENGTLATAAAFMTGQTSPS----ASPAPPPPPPPPPPCPHSGEGFPPSPP---------PPLPP 64

  Fly   841 PAPIEGGGGIPPPPPPMSASPSKTTISPAPLPDPAEGNWFHRTNTMRKSAVNPPKPMRPLYWTRI 905
            |.|  ||..:|||||              .||..:..|.:        |::...|.||..:|..|
  Rat    65 PLP--GGPPVPPPPP--------------GLPPASYLNGY--------SSLGKKKRMRSFFWKTI 105

  Fly   906 VTSAPPAPRPPSVANSTDSTENSGSSPDEPPAANGADAPPTAPPATKEIWT-EIEETPLDNIDEF 969
                                      |:|.....            ..||| ..::.....||:.
  Rat   106 --------------------------PEEQVRGK------------TNIWTLAAKQQHHYQIDKK 132

  Fly   970 T--ELFSRQA-IAPVSKPKELKVKRA------KSIKVLDPERSRNVGIIWRSLHVPSSEIEHAIY 1025
            |  |||.:|. .:..|.||......:      :.|.|||.:||.|:||..:........|...|:
  Rat   133 TIEELFGQQEDTSKASLPKRGGALNSSFRDAREEIAVLDAKRSMNIGIFLKQFKKSPQSIVEDIH 197

  Fly  1026 HIDTSVVSLEALQHMSNIQATEDELQRIKEAAGGDIPLDHPEQFLLDISLISMASERISCIVFQA 1090
            ...:.....|.|:.:..:....:|::::|...|....|...:.||..:..:...|.||..:|.:.
  Rat   198 QGRSEHYGSETLREILKLLPESEEVKKLKTFNGDVSKLSLADSFLYCLIQVPNYSLRIEAMVLKK 262

  Fly  1091 EFEESVTLLFRKLETVSQLSQQLIESEDLKLVFSIILTLGNYMNGGNRQRGQADGFNLDILGKLK 1155
            ||....|.|::.:.|:....::|:..|:|..:..::|..||.||.|. ..|.|.||.|..|.||.
  Rat   263 EFLPFCTSLYKDITTLRAAMKELMLCEELHSILHLVLQAGNIMNAGG-YAGNAVGFKLSSLLKLA 326

  Fly  1156 DVKSKESHTTLLHFIVRTYIAQRRKEGVHPLEIRLPIPEP-ADVERAAQMDFEEVQQQIFDLNKK 1219
            |.|:.:....||||:.:.  ||:..      .|.|...|. ..|:..:::..:.::.::..|   
  Rat   327 DTKANKPGMNLLHFVAQE--AQKHN------TILLNFSEKLQQVQETSRLSLDIIEAELHSL--- 380

  Fly  1220 FLGCKRTTAKVLAASRPEIM--EPFKSKMEEFVEGADKSMAKLHQSLDECR-------DLFLETM 1275
            |:..|        :.|..|.  :..:.:||:|::.|.:.:|:|.....|.:       |.|.|..
  Rat   381 FVRTK--------SLRENIQRDQELRQQMEDFLQFAVEKLAELELWKRELQVEAHTLIDFFCEDK 437

  Fly  1276 RFYHFSPKACTLTLAQCTPDQFF-EYWTNFTNDFKDIWKKEITSLLNELMKKSKQ--AQIESRRN 1337
            .         |:.|.:|.  |.| ::.|.|....||...:|      |..:|..|  .::|.:|:
  Rat   438 E---------TMKLDECF--QIFRDFCTRFNKAVKDNHDRE------EQERKQLQRLKELEQKRH 485

  Fly  1338 VSTKVEKSG 1346
            ..|..|..|
  Rat   486 SWTTGELGG 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capuNP_001137784.1 FH2 888..1315 CDD:214697 102/447 (23%)
Fhdc1NP_001099907.1 FH2 93..457 CDD:396655 98/432 (23%)
PTZ00449 <559..760 CDD:185628
PHA03307 733..>1128 CDD:223039
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.