DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cep97 and Ppp1r42

DIOPT Version :10

Sequence 1:NP_608811.2 Gene:Cep97 / 33610 FlyBaseID:FBgn0031575 Length:806 Species:Drosophila melanogaster
Sequence 2:NP_001121041.1 Gene:Ppp1r42 / 683514 RGDID:1585679 Length:355 Species:Rattus norvegicus


Alignment Length:377 Identity:93/377 - (24%)
Similarity:155/377 - (41%) Gaps:103/377 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 IDSYLKIETLSLARNQLLRMYGVCRLHCLRE---LNLSFNGILSIEGLKECIHLRVLNLEGNNIK 109
            :|...|...|...:.:.|       :.||::   :|.|...|.||:.|..|.:|.||.|..|.|.
  Rat     6 VDLIAKNSNLKPRKEETL-------VQCLKKITHINFSDRNIDSIDDLSLCKNLSVLYLYDNRIS 63

  Fly   110 TIEHLNTNVNLECLNLADNSIGSISDMSYLRNLKELYLHGN---------RLTHLRQCD------ 159
            .:.:||...||..|.|.:|.|..|.::|.|:.|::|||.||         .|..||:..      
  Rat    64 QVTNLNYTTNLTHLYLQNNCISCIENLSSLKKLEKLYLGGNYIAVVEGLEGLEELRELHVESQRL 128

  Fly   160 -------------KCLPTSLETLTLAKNSINDLNEICTLSHLSNLLSISIADNPCVTMINSLDGF 211
                         :.|..||.||.::.|:|:|:.::..|.:|::|:::   ||. :..:..|:..
  Rat   129 PLGEKLLFDPRTLRSLAKSLSTLNISNNNIDDIKDLEMLENLNHLIAV---DNQ-LMHVKDLEVL 189

  Fly   212 DYRPFVLNW---------CMSLKYIDGFVVDPIESLKAEWLYSQGRGRQFRVGEQQGLAKYLSSV 267
             .|..:..|         |:..||.|..:   :.|...|:|    .|::.:..|:|.|..:.:| 
  Rat   190 -LRKLMKLWKMDLNGNPVCLKPKYRDRLI---LMSKSLEFL----DGKEIKNLERQFLMNWKAS- 245

  Fly   268 CPLVGKALENENDRKLRLILSKAQHHQRQLQEEIMDNANSSASTSPSSHRKKPTSRIQSPRFSRL 332
                      :..:|    :||.:.::.:      |..||..|...:.|...|   :..|:.   
  Rat   246 ----------KEAKK----ISKKRRNRSE------DQNNSYISNFETIHHIVP---VYYPQV--- 284

  Fly   333 SGRQGSPE----SMVNSYHGNSSN-------NSIVSDNGSTNHSLQMSISLI 373
                |.|:    |.|..|.|.:|:       .:|..|.|  |.||:.|.||:
  Rat   285 ----GKPKVVFFSDVQRYLGKASSKFSQEDKTTITEDIG--NLSLKESESLL 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cep97NP_608811.2 leucine-rich repeat 11..31 CDD:275380
PPP1R42 13..229 CDD:455733 58/220 (26%)
leucine-rich repeat 32..53 CDD:275380 1/4 (25%)
leucine-rich repeat 76..97 CDD:275380 8/23 (35%)
leucine-rich repeat 98..119 CDD:275380 8/20 (40%)
leucine-rich repeat 120..141 CDD:275380 8/20 (40%)
leucine-rich repeat 142..165 CDD:275380 10/50 (20%)
leucine-rich repeat 166..190 CDD:275380 8/23 (35%)
IQ 581..599 CDD:197470
Ppp1r42NP_001121041.1 PPP1R42 27..246 CDD:411060 62/241 (26%)
leucine-rich repeat 30..51 CDD:275380 7/20 (35%)
leucine-rich repeat 74..95 CDD:275380 8/20 (40%)
leucine-rich repeat 96..147 CDD:275380 10/50 (20%)
leucine-rich repeat 148..169 CDD:275380 7/20 (35%)
leucine-rich repeat 170..195 CDD:275380 6/29 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.