DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cep97 and Lrrcc1

DIOPT Version :10

Sequence 1:NP_608811.2 Gene:Cep97 / 33610 FlyBaseID:FBgn0031575 Length:806 Species:Drosophila melanogaster
Sequence 2:NP_001094115.3 Gene:Lrrcc1 / 266808 RGDID:628722 Length:1025 Species:Rattus norvegicus


Alignment Length:981 Identity:199/981 - (20%)
Similarity:353/981 - (35%) Gaps:282/981 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 HVLNLSKQKLKKVPKQDDAHSIRQLILDENELQKIDNIDSYLKIETLSLARNQLLRMYGVCRLHC 75
            |.:||....:.|:...|...::|.|.|..|::.:|:.:::..|:.||:|:.|.:.|:.|:..|..
  Rat    41 HAINLHCNNISKITSIDHIWNLRHLDLSSNQISQIEGLNTLTKLCTLNLSCNLITRVEGLEALVN 105

  Fly    76 LRELNLSFN------GILSIEGLKECIHLRVLNLEGNNIKTIEHLNTNVNLEC---LNLADNSI- 130
            |..||||:|      |::.:.|||  ..||.::|..|.|.:|.||     |:|   |:...|.| 
  Rat   106 LTRLNLSYNHISDLSGLIPLHGLK--YKLRYIDLHSNYIDSIHHL-----LQCTVGLHFLTNLIL 163

  Fly   131 ---GSISDMSYLRNLKELYLHGNRLTHLRQCDKCL-----PTSLETLTLAKNSINDLNEICTLSH 187
               |..:.:..:...:.:.|  ..|..||..| |.     |.|||       .:|..:..|....
  Rat   164 EKDGEGNPICLVPGYRAIIL--QTLPQLRILD-CKNIFGEPVSLE-------EMNSSHLQCFEGL 218

  Fly   188 LSNLLSISIADNPC-VTMINSLDGFDYRPFVLNWCMSLKYIDGFVVDPIESLKAEWLYSQGRGRQ 251
            |.||:|   :|:|. ::....:|.           ||...||  |:.|:|              :
  Rat   219 LDNLVS---SDSPLNISEDEVVDN-----------MSAPPID--VLPPLE--------------E 253

  Fly   252 FRVGEQQGLAKYLSSVCPLVGKALENENDRKLRLILSKAQHHQRQLQEE----IMDNA------- 305
            |....::.:...|.|.|....:.:.:||:.:..:.|.|......||..|    ::||.       
  Rat   254 FTSTPEENVLTSLLSACSSEPEKINHENNFQNEMKLQKLDDQILQLLNETNNSLIDNVPEKDLRP 318

  Fly   306 ---NSSASTSPSSHRK----KPTSRIQSPRFSRLSGRQGSPESMVNSYHGNSSNNSIVSDNGSTN 363
               ....|.|...:||    |.:.|.:.|.::|         ::.:..|.|.:|.:.||.|....
  Rat   319 KRDTDITSESDYGNRKECSRKVSRRTKIPYYTR---------TIQSIKHHNKNNGAFVSCNRKMR 374

  Fly   364 ----HSLQMSISLI--ENIKNDGEGFSLAGSGM----SSSVTTKTYNS--------------TES 404
                ..|.:..||:  .|::...|    ..:||    .|:....||.|              .|.
  Rat   375 QPYLRDLYVRSSLVNCNNLREVDE----QKNGMIKVDKSASNDNTYRSLVEQLDQEREMRWKAEQ 435

  Fly   405 TPRNITPNPYNDQTFISQTPSGGPLAAASKMVPVPETLMSPDVCPAAVAQRVTVTALNPQLHKTK 469
            |.:.:.  .|.|:..        ..|...|.|.....:.:..:..|...:|.....|...:|:.:
  Rat   436 TEKKLM--DYIDELH--------KQANEKKDVHSQAIITTDRLKDAIFKERHCKAQLEVIVHRLQ 490

  Fly   470 INKNKDNKLNLPRVRSPQ---LKRNQSPTSSPRRMANKCSADNMQAPEKLQQSAVLADSGGFSTD 531
             |:.|...:.|.:.|..|   ::..::...:..:| .|..|...||..:|.|...|..|..    
  Rat   491 -NEIKKLTIELMKARDQQEDHIRHLRTLERALEKM-EKQKAQQQQAQMRLIQEVELKASAA---- 549

  Fly   532 DDGEQINI---------EKLRAIRKMAAQKQQQMHQEQLKQQVDNNLNCQDRLIEHVTESS---- 583
              ..:||:         |:::.:..:.|.|:|:..||...::..|:...||.|.:.:::..    
  Rat   550 --DREINLLRTSLRQEKEQVQQLHDLLALKEQEHRQEIETREFFNDAEFQDALTKRLSKEERKHE 612

  Fly   584 --------------------------AVTIQKMWRGYHTRKKTNKDIAERLQR--------RRTQ 614
                                      |:|::.  |.:...:...:|:|..|.:        :|.:
  Rat   613 QEVKEYQEKINILNQQYLDLENEFRIALTVEA--RRFKDVQDGFEDVATELAKSKHALIWAQRKE 675

  Fly   615 EYIEQLGKDML-LTKAQLENERKIQQLQMQAINALWKKVSTMEV-----DPKGIP---------- 663
            .....|.||:. :.|.|.....::.:|:.:|...|..:::|:|:     ..|.|.          
  Rat   676 NESSSLIKDLTSMVKEQKTKLSEVCKLKQEAAANLQNQINTLEILIEDDKQKSIQIELLKHEKNQ 740

  Fly   664 -----AAAEQ---GEDSNGGGSGH------LSLDQNSA---AVVNDLAK---------------- 695
                 ||.|.   |..:.....||      .||.|:..   |.:..|.:                
  Rat   741 LISELAAKESLIYGLRTERKVWGHELAYQGTSLSQSRGKLEAQIESLCRENESLRKTHESDCDAL 805

  Fly   696 --RCTMLTD-----------------QVQMLQSSIGTIVNCLTMVCNLPQDAIKKQAEIIDCSST 741
              :|.::.|                 |::|||..|..|..|       .|:.:.::...:|   :
  Rat   806 RIKCKIIEDQTETIRKLKDGLQEKDGQIKMLQEQITIIEKC-------SQEQLNEKTSQLD---S 860

  Fly   742 QTDLIAVHTPQIEDLTNFPFTKTRPSTLALESKHEAALACPK--------IDELNDVDLKETQED 798
            ..:.:..|..:.|.|..    :.:...|.||...:|.....|        :..| :..:||.:|.
  Rat   861 IVEKLERHNERKEKLKQ----QLKAKELELEEIRKAYSTLNKKWHDKGELLSNL-ETQVKEVKEK 920

  Fly   799 SENLDK 804
            .||.:|
  Rat   921 FENKEK 926

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cep97NP_608811.2 leucine-rich repeat 11..31 CDD:275380 5/19 (26%)
PPP1R42 13..229 CDD:455733 63/234 (27%)
leucine-rich repeat 32..53 CDD:275380 5/20 (25%)
leucine-rich repeat 76..97 CDD:275380 10/26 (38%)
leucine-rich repeat 98..119 CDD:275380 8/20 (40%)
leucine-rich repeat 120..141 CDD:275380 6/27 (22%)
leucine-rich repeat 142..165 CDD:275380 7/27 (26%)
leucine-rich repeat 166..190 CDD:275380 5/23 (22%)
IQ 581..599 CDD:197470 3/47 (6%)
Lrrcc1NP_001094115.3 PPP1R42 25..197 CDD:455733 48/165 (29%)
leucine-rich repeat 40..61 CDD:275378 5/19 (26%)
leucine-rich repeat 62..83 CDD:275378 5/20 (25%)
leucine-rich repeat 84..105 CDD:275378 7/20 (35%)
leucine-rich repeat 106..131 CDD:275378 10/26 (38%)
leucine-rich repeat 132..145 CDD:275378 5/12 (42%)
leucine-rich repeat 158..188 CDD:275380 5/31 (16%)
GumC <407..>639 CDD:442439 41/249 (16%)
SMC_prok_B 543..>912 CDD:274008 64/391 (16%)
CwlO1 830..>1024 CDD:443091 24/112 (21%)

Return to query results.
Submit another query.