DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slp2 and Foxm1

DIOPT Version :9

Sequence 1:NP_476834.1 Gene:slp2 / 33608 FlyBaseID:FBgn0004567 Length:451 Species:Drosophila melanogaster
Sequence 2:NP_113821.2 Gene:Foxm1 / 58921 RGDID:61807 Length:771 Species:Rattus norvegicus


Alignment Length:559 Identity:127/559 - (22%)
Similarity:179/559 - (32%) Gaps:219/559 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 PLP------PTTHHSALQSP---------------------HPVGLNLTNLMKMARTP--HLKSS 61
            |||      .|:...|.:||                     .|.|:.:.|...|..|.  .:.::
  Rat    17 PLPIQNAPSETSEEEAKRSPGQQEPTQAQASQDVAESSSCKFPAGIKIINHPTMPNTQVVAIPNN 81

  Fly    62 FSINSILPETVEHHDEDEEEDVEKKSPAKFPPNHNNNNLNTTNWGS---PEDHEAESDPESD--- 120
            ..|.||:........|.     ....|.||        :..::.|:   |.|.::::...:|   
  Rat    82 ADIQSIITALTAKGKES-----GSSGPNKF--------ILISSGGASSHPPDPQSQAQTSTDSKR 133

  Fly   121 --LDVTSMSPAPVAN--PNESDPDEVDEEFVEEDIECDGE----TTDGDAEN------KSNDG-- 169
              |...::.|.|.|.  |....|..:..:..|   .|.||    |.|....|      .|:||  
  Rat   134 TELITETLGPKPGAKGVPVPKPPGALPRQRQE---SCGGEAAGCTLDNSLTNIQWLGKMSSDGLG 195

  Fly   170 ----KPVKDKKGN-------------------------EKPPYSYNALIMMAIRQSSEKRLTLNG 205
                |...::|.|                         |:|||||.|:|..||..:..||:||..
  Rat   196 RCSIKQELEEKENCHLEQNRVKVEAPSRASVSWQDSVSERPPYSYMAMIQFAINSTERKRMTLKD 260

  Fly   206 IYEYIMTNHPYYRD-NKQGW------------QNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLD 257
            ||.:|..:.||::. .|.||            ||||||||||:..||   |.....||.::|.:.
  Rat   261 IYTWIEDHFPYFKHIAKPGWKCWHQAYHKLGPQNSIRHNLSLHDMFV---RETSANGKVSFWTIH 322

  Fly   258 PSA------EDVFIGGSTG-----------------KLRRRTTAASRSRLAAFKRSLIGPMFPGL 299
            |||      :.||.....|                 :|||..|..:...|.|  |..:.|:.|.:
  Rat   323 PSANRYLTLDQVFKPLEPGSPQSPEHLESQQKRPNPELRRNVTIKTELPLGA--RRKMKPLLPRV 385

  Fly   300 AAYPQFGQFLTYPPTAPSLLASMYQRYNPFAPKGGPGHPGLPPGLPGLPGPPGPQGPPGPPPPPF 364
            ::|....||    |...||:..                                  |....|.|.
  Rat   386 SSYLVPIQF----PVNQSLVLQ----------------------------------PSVKVPLPL 412

  Fly   365 VAPPTSSELYQRLQYQQLLHQHAAAAALAAHQRQLSVA---------AASAASQPPPTHHHPHLA 420
            .|...|||                   ||.|.:::.:|         .|...:..|.....|.|.
  Rat   413 AASLMSSE-------------------LARHSKRVRIAPKVLLSNEGIAPLPATEPMKEEKPLLG 458

  Fly   421 VGQAPL-----------SPGGDSPGPSPQPLHKPVTVVS 448
            .|..||           .||.|.|     .|.:|:.|.|
  Rat   459 EGLLPLLPIQSIKEEVIQPGEDIP-----HLERPIKVES 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slp2NP_476834.1 Forkhead 180..265 CDD:306709 41/103 (40%)
Foxm1NP_113821.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..54 7/36 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 94..165 14/83 (17%)
FH 235..322 CDD:238016 37/89 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 340..361 1/20 (5%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 542..568
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 584..655
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 693..718
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1270467at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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