DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slp2 and Foxd2

DIOPT Version :9

Sequence 1:NP_476834.1 Gene:slp2 / 33608 FlyBaseID:FBgn0004567 Length:451 Species:Drosophila melanogaster
Sequence 2:XP_233422.5 Gene:Foxd2 / 313504 RGDID:1304642 Length:494 Species:Rattus norvegicus


Alignment Length:387 Identity:129/387 - (33%)
Similarity:153/387 - (39%) Gaps:113/387 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 AESDPESDLDVTS--------------MSPAPVANPNESDPDEVDEEFVEEDIECDGETTD---- 159
            |.|:|::|:||..              .:|..|.......|.|..|..|.||.|..|..:|    
  Rat    19 ALSEPDADIDVVGGGSGGGELTARSGPRAPRDVLPHGHELPPEEAEADVAEDEEESGGCSDCEPR 83

  Fly   160 -----GDAENKSNDGKPVKDKKGNE----------------------KPPYSYNALIMMAIRQSS 197
                 |.|....:.|..|:..:|..                      ||||||.|||.|||.||.
  Rat    84 ALGPRGAAAAAGSPGPGVQAARGATGPGPGPGPGPPSGGAATRSPLVKPPYSYIALITMAILQSP 148

  Fly   198 EKRLTLNGIYEYIMTNHPYYRDNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSAED 262
            :|||||:.|.|:|....||||:....||||||||||||.||||:||...:|||||||.|||.:.|
  Rat   149 KKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPESAD 213

  Fly   263 VFIGGSTGKLRRRTTAASRSRLAAFKRSLIGPMFP------------GLAAYPQFGQFLTYPPTA 315
            :|..||..:.|:|           |||..:.|..|            |.||....|.||      
  Rat   214 MFDNGSFLRRRKR-----------FKRQPLPPPHPHPHPHPELLLRGGAAAAGDPGAFL------ 261

  Fly   316 PSLLASMYQRYNPFAPKGGPGHPGLPPGLPGLPGPPGPQGPPGPPPPPFVAPPTSSELYQRLQYQ 380
                       :.||..|..|: |....||....|     ||||.|.|                 
  Rat   262 -----------SGFAAYGAYGY-GYGLALPAYGAP-----PPGPAPHP----------------- 292

  Fly   381 QLLHQHAAAAALAAHQR-QLSVAAASAASQPP-PTHHHPHLAVGQAPLSPGGDSPGPSPQPL 440
               |.|..|.|.||... ||||....||:.|| |.......:...||........||||..|
  Rat   293 ---HPHPHAFAFAATAPCQLSVPPGRAAAPPPGPPTASVFASATSAPAPAPAPGSGPSPAGL 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slp2NP_476834.1 Forkhead 180..265 CDD:306709 55/84 (65%)
Foxd2XP_233422.5 FH_FOXD1_D2-like 131..229 CDD:410820 61/108 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1270467at2759
OrthoFinder 1 1.000 - - FOG0000010
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

Return to query results.
Submit another query.