DRSC/TRiP Functional Genomics Resources

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Protein Alignment slp2 and Foxd4

DIOPT Version :9

Sequence 1:NP_476834.1 Gene:slp2 / 33608 FlyBaseID:FBgn0004567 Length:451 Species:Drosophila melanogaster
Sequence 2:XP_001055972.2 Gene:Foxd4 / 252886 RGDID:621716 Length:432 Species:Rattus norvegicus


Alignment Length:438 Identity:125/438 - (28%)
Similarity:154/438 - (35%) Gaps:163/438 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 SPEDHEAESDPES-DLDVTSMSPAPVANPNESDPDEVDEEFVEEDIEC-------DGETT----- 158
            :|......||||. ::||.:         .|.|.|:.:::..||..:|       .|..|     
  Rat    12 TPPPSPLSSDPEEVEIDVLA---------EEEDGDQTEDDGGEESHKCLERSLQRPGARTLARRS 67

  Fly   159 ---DGDAENKSN-----------------DG-KPVKDKKGNEKPPYSYNALIMMAIRQSSEKRLT 202
               .||..|.|.                 || :|.       ||||||.|||.|||.||..||||
  Rat    68 AWDCGDLSNSSGFLRKFRAPRTRATTTTADGPQPA-------KPPYSYIALITMAILQSPHKRLT 125

  Fly   203 LNGIYEYIMTNHPYYRDNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSAEDVFIGG 267
            |:||..:|....||||.....||||||||||||.||||:||....|||||||.|||:::|:|..|
  Rat   126 LSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNG 190

  Fly   268 STGKLRRRTTAASRSRLAAFKR-----------SLIGPMFPGLAAYPQFGQFLTY-PPTAPSLLA 320
            |..:.|:|           |||           ....|..|......|.|..|.| .|..|:|..
  Rat   191 SFLRRRKR-----------FKRHHPPPGGHPHCPFPPPAVPATVQVSQPGLLLRYSAPPQPNLAV 244

  Fly   321 --SMYQRYNPFAP---------------------KGGPGHPGLPPGLPGLPGPPG---------- 352
              :...|..|.||                     |.....|.....:|.|...||          
  Rat   245 HPASPPRSRPCAPLHPYPLRYLLLAAPAYADEPRKAEGADPATSLAIPALQPAPGSQPWEGDQGS 309

  Fly   353 ---------------------------PQGPPGPP---------PPPFVAPPTSSELYQRLQYQQ 381
                                       .|.||..|         ||..:.|..:|.|:       
  Rat   310 GSRSRRGCASFTIESIMQGVTGGGTGSAQSPPFAPWSYCHLLQHPPCLLHPQAASPLF------- 367

  Fly   382 LLHQHAAAAALAAHQRQLSVAAASAASQPPPTHHHPHLAVGQAPLSPG 429
                |..||:....|:|        ..:|||.....|....:.  |||
  Rat   368 ----HVPAASRTVLQQQ--------QPRPPPXQQEEHHCAIRC--SPG 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slp2NP_476834.1 Forkhead 180..265 CDD:306709 55/84 (65%)
Foxd4XP_001055972.2 Forkhead 103..189 CDD:278670 56/85 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1270467at2759
OrthoFinder 1 1.000 - - FOG0000010
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

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