DRSC/TRiP Functional Genomics Resources

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Protein Alignment slp1 and Foxa1

DIOPT Version :10

Sequence 1:NP_476730.1 Gene:slp1 / 33607 FlyBaseID:FBgn0003430 Length:322 Species:Drosophila melanogaster
Sequence 2:NP_032285.2 Gene:Foxa1 / 15375 MGIID:1347472 Length:468 Species:Mus musculus


Alignment Length:248 Identity:85/248 - (34%)
Similarity:116/248 - (46%) Gaps:55/248 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 PSK--KQKMTAGSDTK---------KPPYSYNALIMMAIQDSPEQRLTLNGIYQYLINRFPYFKA 159
            ||.  :.:...|.|.|         ||||||.:||.||||.:|.:.|||:.|||::::.|||::.
Mouse   145 PSNLGRSRAGGGGDAKTFKRSYPHAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQ 209

  Fly   160 NKRGWQNSIRHNLSLNKCFTKIPRSYDDPGKGNYWILDPSAEEVFIGETTGKLRR-------KNP 217
            |::.|||||||:||.|.||.|:.||.|.||||:||.|.|.:..:|  |....|||       |.|
Mouse   210 NQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWTLHPDSGNMF--ENGCYLRRQKRFKCEKQP 272

  Fly   218 GAS---------------RTRLAAYRQAIFSPM------MAASPYGAPASSYGYPAVP-----FA 256
            ||.               :........:..||:      .|:...||||.  |..|.|     ..
Mouse   273 GAGGGSGGGGSKGGPESRKDPSGPGNPSAESPLHRGVHGKASQLEGAPAP--GPAASPQTLDHSG 335

  Fly   257 AAAAAALYQRMNPAAYQA---AYQQMQYQQAPQAH--HHQAPHPAQ--MQGYP 302
            |.|.....:..:||:..|   :.........|.:|  |..|||.:|  ::|.|
Mouse   336 ATATGGASELKSPASSSAPPISSGPGALASVPPSHPAHGLAPHESQLHLKGDP 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slp1NP_476730.1 COG5025 <11..>230 CDD:227358 61/156 (39%)
Forkhead 120..205 CDD:459732 47/84 (56%)
Foxa1NP_032285.2 Forkhead_N 17..169 CDD:369872 5/23 (22%)
FH_FOXA1 157..268 CDD:410812 54/112 (48%)
Essential for DNA binding 251..288 9/38 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 269..396 28/122 (23%)
HNF_C 393..457 CDD:430552
Blue background indicates that the domain is not in the aligned region.

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