DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3407 and CTCF

DIOPT Version :10

Sequence 1:NP_608809.1 Gene:CG3407 / 33606 FlyBaseID:FBgn0031573 Length:714 Species:Drosophila melanogaster
Sequence 2:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster


Alignment Length:496 Identity:119/496 - (23%)
Similarity:182/496 - (36%) Gaps:107/496 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   228 QAKLDQVFQDVQLNFENFHNISHHVNDVANVGVNMVLHGQATDKLNAVVVNTSSTPNSVPVVD-- 290
            :.|.|:..:|:|....|||.               .:.|.:.:|    ||||.....|...:|  
  Fly     4 RTKKDEDPEDLQTFLNNFHK---------------EIEGNSDEK----VVNTILEAISAEAIDLD 49

  Fly   291 --DVEFSDTEDMLEGIRNV--VDKVSIEDTCDE---LVDLELTSSGMTAPWFNNNFRDITFPALL 348
              ..|...::.|.|...::  .::...|:..||   .:|.|......|.|......:.....|..
  Fly    50 ENGAEAGGSKPMEEAEADLDHAEEAEEEEEDDEDKYFIDDEGNCYIKTTPKKQKELQKKLKQAAA 114

  Fly   349 LPGEPP---------------PASSEPATPLLKENPHVGDHMALDFLSPEKADPQEEAKLEKTLS 398
            .||:..               ||.|.|..                  :..|..|:.:|...:...
  Fly   115 KPGKATRSVVSTATNKSINLRPAKSTPKA------------------TTSKPPPEPKAISVRPAR 161

  Fly   399 KACEPNEQTLLVAPPAC------------QTPPIPTVPPAN--SSIEQLRRSP------LELS-- 441
            .|....:|:.:..|||.            :.|.||...|.:  ..:|:|...|      .|||  
  Fly   162 AAAAKAKQSAMPPPPALVVKVPAPRGRPRKNPVIPKPEPMDLERELEELVDEPDISSMVTELSDY 226

  Fly   442 -------------------EAFKLEEDDMTDSRPASSFEEGDPDAEEPNECFQMEVLDTSLTEEA 487
                               |.::.|::..|:...|   ::.|.|....|:  ::::...|.|.:.
  Fly   227 TVDEAAVEAATATLTPNEAEVYEFEDNATTEDENA---DKKDVDFVLSNK--EVKLKTASSTSQN 286

  Fly   488 ENKTRRKHFCDKCNRDFNSYNALKYHQYTHNQERSHKCDSCERSFYTQSALKAHERTHSGVKPFK 552
            .|.:..|:.|..|....:....:..|..:|:.|.|.||..|||||.:...|:.|..||.|.||.|
  Fly   287 SNASGHKYSCPHCPYTASKKFLITRHSRSHDVEPSFKCSICERSFRSNVGLQNHINTHMGNKPHK 351

  Fly   553 CDKCEFQFRQWGDLKYHIISRHSDVKAHMCEFCGKSFSRRYSLVVHRRIHTREKNYACQYCDKTF 617
            |..||..|...|:|..|...:|:..|.|.|..|..:......|..|...||.|:.|.|.:|....
  Fly   352 CKLCESAFTTSGELVRHTRYKHTKEKPHKCTECTYASVELTKLRRHMTCHTGERPYQCPHCTYAS 416

  Fly   618 RASSYLLSHIKVHTGERPYECSICEKKFRVSGDLKRHSRIH 658
            :....|..|:.:||||:.|:|.||:.:|..|..||.|..||
  Fly   417 QDMFKLKRHMVIHTGEKKYQCDICKSRFTQSNSLKAHKLIH 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3407NP_608809.1 COG5048 <494..656 CDD:227381 57/161 (35%)
C2H2 Zn finger 497..517 CDD:275368 3/19 (16%)
C2H2 Zn finger 525..545 CDD:275368 8/19 (42%)
C2H2 Zn finger 555..574 CDD:275371 6/18 (33%)
C2H2 Zn finger 582..602 CDD:275368 4/19 (21%)
C2H2 Zn finger 610..630 CDD:275368 4/19 (21%)
C2H2 Zn finger 638..658 CDD:275368 8/19 (42%)
CTCFNP_648109.1 FAP 116..>202 CDD:429334 18/103 (17%)
C2H2 Zn finger 296..316 CDD:275368 3/19 (16%)
COG5048 321..>621 CDD:227381 53/137 (39%)
C2H2 Zn finger 324..344 CDD:275368 8/19 (42%)
C2H2 Zn finger 352..373 CDD:275368 7/20 (35%)
C2H2 Zn finger 381..401 CDD:275368 4/19 (21%)
zf-H2C2_2 394..415 CDD:463886 8/20 (40%)
C2H2 Zn finger 409..429 CDD:275368 4/19 (21%)
zf-H2C2_2 422..446 CDD:463886 11/23 (48%)
C2H2 Zn finger 437..457 CDD:275368 8/19 (42%)
C2H2 Zn finger 467..485 CDD:275368
C2H2 Zn finger 496..516 CDD:275370
C2H2 Zn finger 524..544 CDD:275368
zf-H2C2_2 536..561 CDD:463886
C2H2 Zn finger 552..573 CDD:275368
zf-C2H2 587..609 CDD:395048
C2H2 Zn finger 589..609 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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