DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bowl and sp2

DIOPT Version :9

Sequence 1:NP_001245861.1 Gene:bowl / 33602 FlyBaseID:FBgn0004893 Length:744 Species:Drosophila melanogaster
Sequence 2:XP_031749963.1 Gene:sp2 / 549560 XenbaseID:XB-GENE-968274 Length:588 Species:Xenopus tropicalis


Alignment Length:509 Identity:108/509 - (21%)
Similarity:140/509 - (27%) Gaps:215/509 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PTESSSSEISGGGGGAIPMLRPSRMDQFMNSMAAAAAAVGGGGLPGAADRNGGSGGSDGGSQNGN 66
            |.::|....|...|..|.:..|.          .:....|.|.|.......||..|.....|:.|
 Frog    97 PGKTSIGLFSQAKGNIIQLQAPQ----------LSTVGTGSGQLIFTIQNPGGKIGRYQTVQSTN 151

  Fly    67 GDSRNSSASRISAYE---TQLAYQQHLAGLHGP--PPPPPPSHHREISAFVPV-----------L 115
            ...:||..::|....   |.|.........|.|  |.||.||     |..|.|           |
 Frog   152 QGLQNSFGNQIQLISDGGTALLSPSTNTSKHVPIKPAPPQPS-----STLVKVPNNPGTGLTLTL 211

  Fly   116 P----------TG----------KVR---------PG---------------------------- 123
            |          ||          |||         ||                            
 Frog   212 PISNFSDSTTDTGTQLVSGKQNKKVRKKPPPSIPVPGSPNQDQVETVVIETTAENILQAGNNLLI 276

  Fly   124 ----SNSNYEIIAMMADKR-------KELALREAAAAAAMLGRGPGGPGGPGVPP---PGVLY-- 172
                |...:.::.:|..|.       .:.|||...||:|.|   |..|..|...|   |..||  
 Frog   277 VQSPSTGQHAVLQVMQPKTDTQLVQIPQQALRVVQAASATL---PTVPQKPVQTPECTPTQLYIR 338

  Fly   173 -------------GPAGVPPPPYLTGPGPSPTGAG------------------------------ 194
                         .||.  |.|..:..||..|..|                              
 Frog   339 TASGDVQAVVMQEAPAA--PQPCSSSAGPIVTQTGTPVKNPLRKERSLAKIAPAGSLINLNTTQL 401

  Fly   195 ---------------SFPFP------PG-------------AAAAALFPPGLGPGMHAGLDRRLL 225
                           |...|      ||             .|.:.|.|..:...|...|...| 
 Frog   402 TTAAQGIQTININGVSMQMPVTITSTPGQPQLSVQNVSSGNVAISGLSPSQIQLQMEQALSGEL- 465

  Fly   226 RAPGRASR--------------------PKKQFICKF--CNRQFTKSYNLLIHERTHTDERPYSC 268
             .||...|                    .:|:.:|..  |.|.|.|:..|..|.|.||.|||:.|
 Frog   466 -QPGEKRRRVACTCPNCKDGEKGRWGPPGRKRHVCHIPECGRTFRKTSLLRAHVRLHTGERPFVC 529

  Fly   269 D--ICGKAFRRQDHLRDHRYIH---SKEKPFKCTECGKGFCQSRTLAVHKILHM 317
            :  .|.|.|.|.|.|:.|...|   :.:|.|:|.:|.|.|.:|..::.|...|:
 Frog   530 NWGFCTKRFTRSDELQRHARTHTGVTGDKRFECPQCQKRFTRSDHVSKHFKTHL 583

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bowlNP_001245861.1 COG5048 <232..372 CDD:227381 33/113 (29%)
C2H2 Zn finger 240..260 CDD:275368 8/21 (38%)
zf-H2C2_2 252..277 CDD:290200 12/26 (46%)
C2H2 Zn finger 268..288 CDD:275368 8/21 (38%)
zf-H2C2_2 280..303 CDD:290200 8/25 (32%)
C2H2 Zn finger 296..316 CDD:275368 6/19 (32%)
zf-C2H2 322..344 CDD:278523
C2H2 Zn finger 324..344 CDD:275368
zf-H2C2_2 336..361 CDD:290200
C2H2 Zn finger 352..372 CDD:275368
sp2XP_031749963.1 SP2_N 27..498 CDD:411776 77/422 (18%)
C2H2 Zn finger 502..521 CDD:275368 7/18 (39%)
zf-H2C2_2 514..540 CDD:404364 12/25 (48%)
C2H2 Zn finger 529..551 CDD:275368 8/21 (38%)
zf-H2C2_2 543..571 CDD:404364 9/27 (33%)
C2H2 Zn finger 562..582 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2698
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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