DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shaw and Kcnc4

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:XP_006502538.1 Gene:Kcnc4 / 99738 MGIID:96670 Length:666 Species:Mus musculus


Alignment Length:652 Identity:260/652 - (39%)
Similarity:348/652 - (53%) Gaps:131/652 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 DSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILN-------------------E 67
            ::..::::||||.|||||::||:.:|.|||:.|.:......|..:                   |
Mouse    33 EASEKIIINVGGTRHETYRSTLRTLPGTRLAWLADPDGGGRPESDGGGAGSSGSSGGGGGGGGCE 97

  Fly    68 YFFDRHPGVFAQVLNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETL 132
            :||||||||||.|||||||||||.|.|||||||||||.|||:|...|||||||||.||||.:|.|
Mouse    98 FFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELTFWGIDETDVEPCCWMTYRQHRDAEEAL 162

  Fly   133 AVLDRLD--------LDTEKPSEEELA-RKFGFEE-----DYYKGTISWWQEMKPRIWSLFDEPY 183
            .:.:..|        .|.....|.||| ::.|..|     ....|....||   ||:|:||::||
Mouse   163 DIFESPDGGGGGAGPGDEAGDDERELALQRLGPHEGGSGPGAGSGGCRGWQ---PRMWALFEDPY 224

  Fly   184 SSNAAKTIGVVSVFFICISILSFCLKTHPDMRVPIVRNITV--KTANGSNGWFLDKTQTNAHIAF 246
            ||.||:.:...|:|||.:||.:|||:||....:.  ||:|.  :..|.::..|..:.:|...:. 
Mouse   225 SSRAARVVAFASLFFILVSITTFCLETHEAFNID--RNVTEIHRVGNITSVRFRREVETEPILT- 286

  Fly   247 FYIECVCNAWFTFEILVRFISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLENADILEF 311
             |||.||..|||.|.|||.:..|:..:|:|:.:||||::|.|.||:::.|...:|.... |:|.|
Mouse   287 -YIEGVCVMWFTLEFLVRIVCCPDTLDFVKNLLNIIDFVAILPFYLEVGLSGLSSKAAR-DVLGF 349

  Fly   312 FSI---IRIMRLFKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERI----- 368
            ..:   :||:|:||||||..||::|..|.|||..|..||:.||.||::|||:::||||||     
Mouse   350 LRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGARPS 414

  Fly   369 --QPNPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNF 431
              :.|.|.||.:||:|.|||:|||||:|||||.|||:.||.||||||||||||||:||||||:||
Mouse   415 DPRGNDHTDFKNIPIGFWWAVVTMTTLGYGDMYPKTWSGMLVGALCALAGVLTIAMPVPVIVNNF 479

  Fly   432 AMYYSHTQARAKLPKKRRRVLPVEQPRQPRL-----------------------PGAPGGV---- 469
            .||||...|:.||||||::    ..||.|:|                       |....||    
Mouse   480 GMYYSLAMAKQKLPKKRKK----HVPRPPQLESPIYCKSEETSPRDSTYSDTSPPAREEGVVERK 540

  Fly   470 ---SGCGTPGSGPHSGPMGSGGTGP-------------RRMNNKTKDLVSPKSVAQLF---AGPL 515
               |......:...|...|:|.|.|             ||...:.::    |..|..|   ||..
Mouse   541 RADSKQNGDANAVLSDEEGAGLTQPLALAPTPEERRALRRSGTRDRN----KKAAACFLLSAGDY 601

  Fly   516 GA---------------SIVAMSPRTMLDLNPALAMGKPTFQPRIPTPLAATPP------PPVSS 559
            ..               :.:|.:..|.|.|:|..:.....:.||   .|..:||      ||...
Mouse   602 ACADGSVRKGCEKSRSLNNIAGAAGTSLGLSPLASRYSSPYPPR---KLLLSPPFHPLTSPPPGH 663

  Fly   560 AG 561
            :|
Mouse   664 SG 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 64/116 (55%)
BTB_2 27..117 CDD:280393 57/108 (53%)
Ion_trans 244..439 CDD:278921 111/204 (54%)
Ion_trans_2 355..429 CDD:285168 53/80 (66%)
Kcnc4XP_006502538.1 Potassium_chann 1..29 CDD:314363
BTB_KCNC2_4 35..162 CDD:349722 69/126 (55%)
Ion_trans 229..487 CDD:366146 129/262 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 254 1.000 Domainoid score I2047
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 460 1.000 Inparanoid score I1553
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48788
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102927
Panther 1 1.100 - - LDO PTHR11537
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3268
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.870

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