DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shaw and KCNQ4

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_004691.2 Gene:KCNQ4 / 9132 HGNCID:6298 Length:695 Species:Homo sapiens


Alignment Length:427 Identity:99/427 - (23%)
Similarity:160/427 - (37%) Gaps:130/427 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 YKGTISWWQEM--KPRIWSLFDEPYSSNAAKTIGVVSVF-----FIC--ISILSFCLKTHPDMRV 216
            |:...:|...:  :||.|:.              |..||     |.|  :|:|| .::.|.::  
Human    80 YRRLQNWVYNVLERPRGWAF--------------VYHVFIFLLVFSCLVLSVLS-TIQEHQEL-- 127

  Fly   217 PIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFEILVRFISS---------PNKW 272
                                     |:.....:|.|....|..|.:||..|:         ..::
Human   128 -------------------------ANECLLILEFVMIVVFGLEYIVRVWSAGCCCRYRGWQGRF 167

  Fly   273 EFIKSSVNIIDYIATLSFYIDLVLQRFASHLENADILEFFSIIRIMRLFKLTRHSSGLKILIQTF 337
            .|.:....:||:|..:: .:.::......::.....|.....::|:|:.::.|.....|:|....
Human   168 RFARKPFCVIDFIVFVA-SVAVIAAGTQGNIFATSALRSMRFLQILRMVRMDRRGGTWKLLGSVV 231

  Fly   338 RASAKELTLLVFFLVLGIVIFAS-LVYYAERIQPNPHNDFNSIPLGLWWALVTMTTVGYGDMAPK 401
            .|.:||| :..:::...::|||| |||.||:   :.::||:|....|||..:|:||:||||..|.
Human   232 YAHSKEL-ITAWYIGFLVLIFASFLVYLAEK---DANSDFSSYADSLWWGTITLTTIGYGDKTPH 292

  Fly   402 TYIGMFVGALCALAGVLTIALPVPVIVSNFAM---------------------------YYSHTQ 439
            |::|..:.|..||.|:...|||..::.|.||:                           .||...
Human   293 TWLGRVLAAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEKRRMPAANLIQAAWRLYSTDM 357

  Fly   440 ARAK-----------LPKKRRRVL--------------PVEQPRQPRLPGAPG---GVSGCGTPG 476
            :||.           ||..|...|              |:|..|.|...|||.   .|:.|..||
Human   358 SRAYLTATWYYYDSILPSFRELALLFEHVQRARNGGLRPLEVRRAPVPDGAPSRYPPVATCHRPG 422

  Fly   477 SGP----HSGPMG-----SGGTGPRRMNNKTKDLVSP 504
            |..    .|..||     ..|:..||.....:.|..|
Human   423 STSFCPGESSRMGIKDRIRMGSSQRRTGPSKQHLAPP 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585
BTB_2 27..117 CDD:280393
Ion_trans 244..439 CDD:278921 58/231 (25%)
Ion_trans_2 355..429 CDD:285168 32/74 (43%)
KCNQ4NP_004691.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
MIG-14_Wnt-bd <92..190 CDD:284153 24/140 (17%)
Ion_trans 126..330 CDD:278921 57/235 (24%)
Ion_trans_2 246..320 CDD:285168 32/76 (42%)
Selectivity filter. /evidence=ECO:0000250 283..288 3/4 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 400..480 18/60 (30%)
KCNQ_channel 474..653 CDD:281513
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 496..515
A-domain (Tetramerization) 546..650
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 587..606
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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