DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shaw and Kcns3

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001376159.1 Gene:Kcns3 / 83588 RGDID:621527 Length:491 Species:Rattus norvegicus


Alignment Length:427 Identity:137/427 - (32%)
Similarity:223/427 - (52%) Gaps:42/427 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 ENRVVLNVGGIRHETYKATLKKIPATRLSRL---------TEALANYDPILNEYFFDRHPGVFAQ 79
            |..|.|||||.:....::||.:.|.|||.:|         .|...:|.....||:|||:|.:|..
  Rat    14 EELVNLNVGGFKQSVDQSTLLRFPHTRLGKLLTCHSEEAILELCDDYSVADKEYYFDRNPSLFRY 78

  Fly    80 VLNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVLDRL--DLDT 142
            |||:|.|||||...::|...|.:|:|:||::...::.||...| |.|..:......|:.  |:.|
  Rat    79 VLNFYYTGKLHVMEELCVFSFCQEIEYWGINELFIDSCCSSRY-QERKEESHEKDWDQKSNDVST 142

  Fly   143 EKPSEEELARKFGFEEDYYKGTISWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFICISILSFC 207
            :...||...    ||::..|.....:.:::.:||...:.|....:||.|.:.|:..:..||::.|
  Rat   143 DSSFEESSL----FEKELEKFDELRFGQLRKKIWIRMENPAYCLSAKLIAISSLSVVLASIVAMC 203

  Fly   208 LKTHPDMRVPIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFEILVRFISSPNKW 272
            :.:..:.:             ..:|...|.......||       |.||||.|:.:|.:::|::.
  Rat   204 VHSMSEFQ-------------NEDGEVDDPVLEGVEIA-------CIAWFTGELAIRLVAAPSQK 248

  Fly   273 EFIKSSVNIIDYIATLSFYIDLVL---QRFASHLEN-ADILEFFSIIRIMRLFKLTRHSSGLKIL 333
            :|.|:.:||||:::.:.||..|.:   :..:..:|| ..:::...::||.|:.||.|||.||:.|
  Rat   249 KFWKNPLNIIDFVSIIPFYATLAVDTKEEESEDIENMGKVVQILRLMRIFRILKLARHSVGLRSL 313

  Fly   334 IQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQPNPHNDFNSIPLGLWWALVTMTTVGYGDM 398
            ..|.|.|..|:.||:.||.:||.||:.|:|..|:  ....:...|||:..|||.::||||||||.
  Rat   314 GATLRHSYHEVGLLLLFLSVGISIFSVLIYSVEK--DELASSLTSIPICWWWATISMTTVGYGDT 376

  Fly   399 APKTYIGMFVGALCALAGVLTIALPVPVIVSNFAMYY 435
            .|.|..|..:.:.|.:.|:|.:|||:.:|.:.|:.||
  Rat   377 HPVTLAGKIIASTCIICGILVVALPITIIFNKFSKYY 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 40/106 (38%)
BTB_2 27..117 CDD:280393 37/98 (38%)
Ion_trans 244..439 CDD:278921 74/196 (38%)
Ion_trans_2 355..429 CDD:285168 30/73 (41%)
Kcns3NP_001376159.1 BTB_POZ_KCNS3 15..122 CDD:349735 40/107 (37%)
Ion_trans 184..417 CDD:395416 83/252 (33%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 370..375 4/4 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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