DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shaw and kcna6a

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001124098.1 Gene:kcna6a / 795490 ZFINID:ZDB-GENE-080722-21 Length:475 Species:Danio rerio


Alignment Length:452 Identity:168/452 - (37%)
Similarity:246/452 - (54%) Gaps:73/452 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 HAAM--NLINMDSENR-----VVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFF 70
            |.|:  ::..|:..::     |.:|:.|:|.||...||.:.|.|.|....:.:..:||:.||:||
Zfish    12 HVALLQDICEMEQSDQECCELVTINISGLRFETQLKTLARYPNTLLGDPIKRMRFFDPLRNEFFF 76

  Fly    71 DRHPGVFAQVLNYYRT-GKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAV 134
            ||:...|..:|.||:: |:|..|.:|...:|.:|::|:.:..:.:         :|....|.|..
Zfish    77 DRNRPSFDAILYYYQSGGRLRRPINVPVDMFLDEIKFYEIGDDVI---------KHFQEDEGLLK 132

  Fly   135 LDRLDLDTEKPSEEELARKFGFEEDYYKGTISWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFI 199
            .|...|    ||                      .|.|.:||.||:.|.||.||:.|.:|||..|
Zfish   133 EDERPL----PS----------------------NEFKRQIWLLFEHPDSSGAARIIAIVSVMVI 171

  Fly   200 CISILSFCLKTHPDMR---------VPIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNA 255
            .|||:.||::|.|:.|         :|.....:|:..:.    :.|        .||.:|.:|..
Zfish   172 LISIIIFCIETLPEFREDDRVFDNHLPANSTTSVQRLSA----YTD--------PFFLLETICIV 224

  Fly   256 WFTFEILVRFISSPNKWEFIKSSVNIIDYIATLSFYIDLVL-----QRFASHLENADILEFFSII 315
            ||.||:.:||::.|:|..|.|..:|.||.:|.:.::|.|.|     |.......:..||....::
Zfish   225 WFCFELFIRFLACPSKPTFFKDIMNTIDIVAIMPYFITLSLELGEVQSNQQQTTSLAILRVIRLV 289

  Fly   316 RIMRLFKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQPNPHNDFNSIP 380
            |:.|:|||:|||.||:||.||.|||.:||.||:|||::||::|:|.||:||  ..:|...|.|||
Zfish   290 RVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLIIGIILFSSAVYFAE--ADDPETSFTSIP 352

  Fly   381 LGLWWALVTMTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNFAMYY--SHTQA 440
            ...|||:|:|||||||||.|.|..|..||::||:|||||||||||||||||..:|  .|.:|
Zfish   353 DAFWWAVVSMTTVGYGDMYPVTIGGKIVGSMCAIAGVLTIALPVPVIVSNFNYFYHREHNEA 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 30/98 (31%)
BTB_2 27..117 CDD:280393 30/90 (33%)
Ion_trans 244..439 CDD:278921 100/201 (50%)
Ion_trans_2 355..429 CDD:285168 45/73 (62%)
kcna6aNP_001124098.1 BTB 33..122 CDD:197585 30/97 (31%)
BTB_2 33..121 CDD:280393 30/87 (34%)
Ion_trans 211..411 CDD:278921 100/209 (48%)
Ion_trans_2 <350..401 CDD:285168 36/50 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

Return to query results.
Submit another query.