DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shaw and Kcnc4

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:XP_038959057.1 Gene:Kcnc4 / 684516 RGDID:1589169 Length:663 Species:Rattus norvegicus


Alignment Length:483 Identity:231/483 - (47%)
Similarity:306/483 - (63%) Gaps:54/483 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 DSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILN----------------EYFF 70
            ::..::::||||.|||||::||:.:|.|||:.|.:......|..:                |:||
  Rat    33 EASEKIIINVGGTRHETYRSTLRTLPGTRLAWLADPDGGGRPESDGGGAGSSGSSGGGGGCEFFF 97

  Fly    71 DRHPGVFAQVLNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVL 135
            ||||||||.|||||||||||.|.|||||||||||.|||:|...|||||||||.||||.:|.|.:.
  Rat    98 DRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELTFWGIDETDVEPCCWMTYRQHRDAEEALDIF 162

  Fly   136 DRLD--------LDTEKPSEEELA-RKFGFEE-----DYYKGTISWWQEMKPRIWSLFDEPYSSN 186
            :..|        .|.....|.||| ::.|..|     ....|....||   ||:|:||::||||.
  Rat   163 ESPDGGGGGAGPGDEAGDDERELALQRLGPHEGGSGPGAGSGGCRGWQ---PRMWALFEDPYSSR 224

  Fly   187 AAKTIGVVSVFFICISILSFCLKTHPDMRVPIVRNITV--KTANGSNGWFLDKTQTNAHIAFFYI 249
            ||:.:...|:|||.:||.:|||:||....:.  ||:|.  :..|.::..|..:.:|...:.  ||
  Rat   225 AARVVAFASLFFILVSITTFCLETHEAFNID--RNVTEIHRVGNITSVRFRREVETEPILT--YI 285

  Fly   250 ECVCNAWFTFEILVRFISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLENADILEFFSI 314
            |.||..|||.|.|||.:..|:..:|:|:.:||||::|.|.||:::.|...:|.... |:|.|..:
  Rat   286 EGVCVMWFTLEFLVRIVCCPDTLDFVKNLLNIIDFVAILPFYLEVGLSGLSSKAAR-DVLGFLRV 349

  Fly   315 ---IRIMRLFKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERI-------Q 369
               :||:|:||||||..||::|..|.|||..|..||:.||.||::|||:::||||||       :
  Rat   350 VRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGARPSDPR 414

  Fly   370 PNPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNFAMY 434
            .|.|.||.:||:|.|||:|||||:|||||.|||:.||.||||||||||||||:||||||:||.||
  Rat   415 GNDHTDFKNIPIGFWWAVVTMTTLGYGDMYPKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMY 479

  Fly   435 YSHTQARAKLPKKRRRVLPVEQPRQPRL 462
            ||...|:.||||||::    ..||.|:|
  Rat   480 YSLAMAKQKLPKKRKK----HVPRPPQL 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 64/113 (57%)
BTB_2 27..117 CDD:280393 57/105 (54%)
Ion_trans 244..439 CDD:278921 111/204 (54%)
Ion_trans_2 355..429 CDD:285168 53/80 (66%)
Kcnc4XP_038959057.1 Potassium_chann 1..29 CDD:402836
BTB_KCNC2_4 35..159 CDD:349722 69/123 (56%)
Ion_trans 226..484 CDD:395416 129/262 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 255 1.000 Domainoid score I1967
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 460 1.000 Inparanoid score I1505
OMA 1 1.010 - - QHG48788
OrthoDB 1 1.010 - - D331021at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45048
orthoMCL 1 0.900 - - OOG6_102927
Panther 1 1.100 - - LDO PTHR11537
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.980

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