DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shaw and kcnv2a

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:XP_695650.4 Gene:kcnv2a / 567267 ZFINID:ZDB-GENE-091117-27 Length:518 Species:Danio rerio


Alignment Length:438 Identity:137/438 - (31%)
Similarity:220/438 - (50%) Gaps:58/438 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 LNVGGIRHETYKATLKKIPATRLSRLT---------EALANYDPILNEYFFDRHPGVFAQVLNYY 84
            :||||..::.......|.|.||:.||.         :...:|....||:||||.|.||..:.|:|
Zfish    86 INVGGKVYQISYRVAAKYPKTRIGRLATYTDHNRKLDLCDDYTVHNNEFFFDRDPDVFHNIFNFY 150

  Fly    85 RTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRD-TQETLAVLDRLDLDTEKPSEE 148
            |||.|....::|...|.||:.:||:.......||.:::.:.:| ..|.|.|...|:.:.|....|
Zfish   151 RTGVLWIKDELCPRNFLEEINYWGVRIKNTHRCCRISFEERQDELNEQLKVQRELEAEVETEEHE 215

  Fly   149 ELARKFGFEEDYYKGTISWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFICISILSFCLKTHPD 213
            :|.:...|....:            .||::.::|:||..||.:.|.|.||:.:|:::..|.|..:
Zfish   216 DLFQDMAFGHTRF------------LIWNMMEKPFSSIIAKIMAVASSFFVLVSLVAMTLNTVEE 268

  Fly   214 MRVPIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFEILVRFISSPNKWEFIKSS 278
            |:.     ||      :||....||...      |:|..|.|:||.|.|:|.:|:|:...|.:|.
Zfish   269 MQY-----IT------TNGQLSGKTYCE------YVETFCIAFFTMEYLLRLVSTPDLTRFGRSV 316

  Fly   279 VNIIDYIATLSFYIDLVLQRFASH--------LEN-------ADILEFFSIIRIMRLFKLTRHSS 328
            :|.:|.||.|..|:.:||:.|.||        :|.       ..:|....::||.|:.||.|||:
Zfish   317 LNAVDLIAILPLYLQMVLESFESHDYWKHGSDIETVGRVGKLGQVLRIMRLMRIFRILKLARHST 381

  Fly   329 GLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQPNPH-NDFNSIPLGLWWALVTMTT 392
            ||:....|.|...:::..|..|:.:||:.|:::||..|.   :.| .:|.|||...|||.|:::|
Zfish   382 GLRAFGFTLRQCYQQVGCLFLFIAMGILTFSAMVYTVEH---DVHKTNFTSIPHAWWWAAVSIST 443

  Fly   393 VGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQA 440
            ||||||.|:|::|......|...|::...:|:.::.:.|:.|||..:|
Zfish   444 VGYGDMFPETHLGRIFAFACISFGIILNGMPISILFNKFSDYYSKLKA 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 34/104 (33%)
BTB_2 27..117 CDD:280393 32/96 (33%)
Ion_trans 244..439 CDD:278921 72/210 (34%)
Ion_trans_2 355..429 CDD:285168 27/74 (36%)
kcnv2aXP_695650.4 BTB 84..175 CDD:295341 31/88 (35%)
BTB 86..175 CDD:197585 31/88 (35%)
Ion_trans 285..490 CDD:278921 72/213 (34%)
Ion_trans_2 403..484 CDD:285168 30/83 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.