DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shaw and kcng4a

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001103499.1 Gene:kcng4a / 561003 ZFINID:ZDB-GENE-050419-11 Length:538 Species:Danio rerio


Alignment Length:556 Identity:170/556 - (30%)
Similarity:255/556 - (45%) Gaps:112/556 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TYIPK----KMQHYAHAA-------MNLINMDSENRVVLNVGGIRHETYKATLKKIPATRLSRL- 54
            |.||:    |..:|..|.       :||:  |...:.::||||.|:....:||::.|.|||.|| 
Zfish    27 TEIPETETIKGVYYQRAQFIRRPEDLNLV--DHGLQALINVGGNRYTFPWSTLEQFPLTRLGRLK 89

  Fly    55 ----TEALA----NYDPILNEYFFDRHPGVFAQVLNYYRTGKLHYPTDVCGPLFEEELEFWGLDS 111
                .|.:|    :||...:|:||||.|..|..:||:...|||....::|.....|||.:||::.
Zfish    90 PCSSPEEIARVCDDYDEARHEFFFDRSPNAFRVILNFLAAGKLRLLREMCALSLHEELNYWGVEM 154

  Fly   112 NQVEPCC-WMTYTQHRDTQETLAVLDRLD-------LDTEKPSEEELARKFGFEEDYYKGTISWW 168
            ..:|.|| ...||:    .|.:|.|:|.:       |....|..|...|||              
Zfish   155 TYMERCCKRKMYTR----LEEVAELERREEERRQRNLQLRPPIVETRYRKF-------------- 201

  Fly   169 QEMKPRIWSLFDEPYSSNAAKTIGVVSVFFICISILSFCLKTHPDMRVPIVRNITVKTANGSNGW 233
               ..::..:.:.|.|....|.....||..:.|:::|.|:.|.||:|....|.:.          
Zfish   202 ---MNQLRDMVENPQSGVPGKVFACFSVLMVAITVISLCISTMPDLREEENRGVC---------- 253

  Fly   234 FLDKTQTNAHIAFFYIECVCNAWFTFEILVRFISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQR 298
                :|...|:  |.||.||.|||:.|.|:||:.:.:|.:|::..:||||.:|.|.:|:.||:..
Zfish   254 ----SQKCQHM--FIIETVCVAWFSLEFLLRFVQARSKLQFLRGPLNIIDAMAILPYYVSLVVDE 312

  Fly   299 FAS-----------HLENAD-ILEFFSIIRIMRLFKLTRHSSGLKILIQTFRASAKELTLLVFFL 351
            ..:           :|:... :|.....:||:.:.:|.|||.||:.|..|.|.|.:|..||:.||
Zfish   313 KPNDENERPSGGKGYLDKLGLVLRILRALRILYVMRLARHSLGLQTLGLTVRRSTREFGLLLLFL 377

  Fly   352 VLGIVIFASLVYYAER----IQPNPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYIGMFVGALC 412
            .:.:.:|:.||:.||.    :|     ||:|||...|||:::|||||||||.|::..|..|....
Zfish   378 CVAVTLFSPLVHLAESELTGVQ-----DFSSIPASYWWAIISMTTVGYGDMVPRSIPGQVVALSS 437

  Fly   413 ALAGVLTIALPVPVIVSNFAMYYSH-TQARAKLPKKRRRV-------LPVEQP------RQPRLP 463
            .|:|:|.:|.|...|...|:..|.. .|...:|.|:....       |..||.      ..|||.
Zfish   438 ILSGILIMAFPATSIFHMFSRSYQELKQEHDRLFKEECAAAAAATTGLEEEQDGGWVAFPPPRLV 502

  Fly   464 GAPGGVSGCGTPGSGPHSGPMGSGG--TGPRRMNNK 497
            ..|    ...|.||......:|:||  :|    |||
Zfish   503 LTP----DTETAGSCEDLSLLGNGGETSG----NNK 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 40/107 (37%)
BTB_2 27..117 CDD:280393 36/98 (37%)
Ion_trans 244..439 CDD:278921 76/211 (36%)
Ion_trans_2 355..429 CDD:285168 32/77 (42%)
kcng4aNP_001103499.1 BTB 63..169 CDD:197585 40/109 (37%)
BTB_2 63..160 CDD:280393 36/96 (38%)
Ion_trans 261..464 CDD:278921 76/207 (37%)
Ion_trans_2 376..458 CDD:285168 35/86 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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