DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shaw and kcnv1

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:XP_688404.1 Gene:kcnv1 / 559915 ZFINID:ZDB-GENE-100922-109 Length:485 Species:Danio rerio


Alignment Length:432 Identity:147/432 - (34%)
Similarity:233/432 - (53%) Gaps:58/432 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 VLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPIL----------NEYFFDRHPGVFAQVLN 82
            ::||||.|:...:..|...|.|||.:|  ||::.|..|          |||||||:...|..::|
Zfish    42 IINVGGSRYILSQELLASHPETRLGKL--ALSSRDSALDLCDDADFLENEYFFDRNSQTFQYIMN 104

  Fly    83 YYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVLDRLDLDTEKPSE 147
            :|:||.||...::|...|.:|:|:||:|..:::.||...|.:.::.:|:|.:  |.|.|.....|
Zfish   105 FYKTGHLHVREELCVISFLQEIEYWGIDELRIDSCCRDKYYRRKEMKESLDI--RKDADVMDKEE 167

  Fly   148 EELARKFGFEEDYYKGTISWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFICISILSFCLKTHP 212
            |:           :.|.:.  |:::.|:|.:.:.|.||.||||.|.:|:||:.:||::..|.:  
Zfish   168 ED-----------FTGVLC--QDLRQRLWDIMENPDSSKAAKTFGTLSMFFVVVSIVNMALIS-- 217

  Fly   213 DMRVPIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFEILVRFISSPNKWEFIKS 277
                                  ||.:...|.|....:|.:|..|||.|:::||:...:|.:|.:|
Zfish   218 ----------------------LDFSVIGAPIILDILEYICIIWFTGELVLRFLCVRDKCKFSRS 260

  Fly   278 SVNIIDYIATLSFYIDLVLQRF---ASHLENAD-ILEFFSIIRIMRLFKLTRHSSGLKILIQTFR 338
            .|||||.:|.|.||:.|.::..   ::.|||.. :::...::|.:|:.||.|||:|||.|..|..
Zfish   261 VVNIIDLLAILPFYVTLAVESLHGESTELENVGRVVQVLRLMRSLRMLKLGRHSTGLKSLGLTIA 325

  Fly   339 ASAKELTLLVFFLVLGIVIFASLVYYAERIQPNPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTY 403
            ...:|:.||:.||.:||.|||:|.|..|  ...|...|.::|...|||..:||||||||:.|.|.
Zfish   326 QCYEEVGLLMLFLSVGISIFATLEYAIE--HDTPETTFTNVPSAWWWATTSMTTVGYGDIRPDTA 388

  Fly   404 IGMFVGALCALAGVLTIALPVPVIVSNF-AMYYSHTQARAKL 444
            :|..:..:|.|:|:|.:|||:.:|...| |.|::.....|.|
Zfish   389 VGKVMAFICILSGILILALPIAIINDRFSACYFTLKMKEAAL 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 39/106 (37%)
BTB_2 27..117 CDD:280393 36/98 (37%)
Ion_trans 244..439 CDD:278921 78/199 (39%)
Ion_trans_2 355..429 CDD:285168 32/73 (44%)
kcnv1XP_688404.1 BTB 42..141 CDD:197585 37/100 (37%)
BTB_2 42..139 CDD:280393 36/98 (37%)
Ion_trans 226..420 CDD:278921 77/195 (39%)
Ion_trans_2 337..417 CDD:285168 35/81 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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